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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9841 O_BomoMSG18859_5prime_partial:A_BomoMSG_c26263_g1_i1
130bp
 uncharacterized_protein_LOC101741882_isoform_X5_[Bombyx_mori]
GO:0002102 C podosome
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007010 P cytoskeleton organization
GO:0007519 P skeletal muscle tissue development
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032467 P positive regulation of cytokinesis
GO:0036449 C microtubule minus-end
GO:0042995 C cell projection
GO:0043034 C costamere
GO:0051015 F actin filament binding
GO:0071437 C obsolete invadopodium
9842 O_BomoMSG1885_5prime_partial:A_BomoMSG_c9298_g1_i1
170bp
 nodal_modulator_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
GO:0031648 P protein destabilization
9843 O_BomoMSG18860_5prime_partial:A_BomoMSG_c26264_g1_i2
315bp
 origin_recognition_complex_subunit_2_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000792 C heterochromatin
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0005694 C chromosome
GO:0005723 C alpha-heterochromatin
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006342 P heterochromatin assembly
GO:0007052 P mitotic spindle organization
GO:0007076 P mitotic chromosome condensation
GO:0007307 P eggshell chorion gene amplification
GO:0008283 P cell population proliferation
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
9844 O_BomoMSG18861_5prime_partial:A_BomoMSG_c26264_g1_i3
211bp
 origin_recognition_complex_subunit_2_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000792 C heterochromatin
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0005694 C chromosome
GO:0005723 C alpha-heterochromatin
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006342 P heterochromatin assembly
GO:0007052 P mitotic spindle organization
GO:0007076 P mitotic chromosome condensation
GO:0007307 P eggshell chorion gene amplification
GO:0008283 P cell population proliferation
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
9845 O_BomoMSG18862_complete:A_BomoMSG_c26264_g1_i4
554bp
 origin_recognition_complex_subunit_2_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000792 C heterochromatin
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0005694 C chromosome
GO:0005723 C alpha-heterochromatin
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006342 P heterochromatin assembly
GO:0007052 P mitotic spindle organization
GO:0007076 P mitotic chromosome condensation
GO:0007307 P eggshell chorion gene amplification
GO:0008283 P cell population proliferation
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
9846 O_BomoMSG18863_5prime_partial:A_BomoMSG_c26266_g1_i1
126bp
 D-aspartate_oxidase_[Bombyx_mori]
GO:0003884 F D-amino-acid oxidase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005741 C mitochondrial outer membrane
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005782 C peroxisomal matrix
GO:0005829 C cytosol
GO:0006562 P proline catabolic process
GO:0016491 F oxidoreductase activity
GO:0036088 P D-serine catabolic process
GO:0042416 P dopamine biosynthetic process
GO:0046416 P D-amino acid metabolic process
GO:0046487 P glyoxylate metabolic process
GO:0046983 F protein dimerization activity
GO:0048037 F obsolete cofactor binding
GO:0055114 P obsolete oxidation-reduction process
GO:0055130 P D-alanine catabolic process
GO:0070178 P D-serine metabolic process
GO:0071949 F FAD binding
9847 O_BomoMSG18864_5prime_partial:A_BomoMSG_c26266_g1_i1
121bp
9848 O_BomoMSG18865_complete:A_BomoMSG_c26266_g1_i2
338bp
 D-aspartate_oxidase_[Bombyx_mori]
GO:0003884 F D-amino-acid oxidase activity
GO:0005777 C peroxisome
GO:0008445 F D-aspartate oxidase activity
GO:0016491 F oxidoreductase activity
GO:0046416 P D-amino acid metabolic process
GO:0055114 P obsolete oxidation-reduction process
GO:0071949 F FAD binding
9849 O_BomoMSG18866_5prime_partial:A_BomoMSG_c26266_g1_i2
121bp
9850 O_BomoMSG18867_5prime_partial:A_BomoMSG_c26267_g1_i1
209bp
 uncharacterized_protein_LOC105842387_[Bombyx_mori]
9851 O_BomoMSG18868_5prime_partial:A_BomoMSG_c26267_g1_i3
158bp
 uncharacterized_protein_LOC105842387_[Bombyx_mori]
9852 O_BomoMSG18869_5prime_partial:A_BomoMSG_c26267_g1_i4
215bp
 uncharacterized_protein_LOC105842387_[Bombyx_mori]
9853 O_BomoMSG1886_5prime_partial:A_BomoMSG_c9298_g1_i1
116bp
9854 O_BomoMSG18870_5prime_partial:A_BomoMSG_c26267_g1_i5
175bp
 uncharacterized_protein_LOC105842387_[Bombyx_mori]
9855 O_BomoMSG18871_complete:A_BomoMSG_c26267_g1_i6
196bp
 uncharacterized_protein_LOC105842387_[Bombyx_mori]
9856 O_BomoMSG18872_complete:A_BomoMSG_c26268_g3_i1
347bp
 ADP-ribosylation_factor_GTPase-activating_protein_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0030100 P regulation of endocytosis
GO:0036498 P IRE1-mediated unfolded protein response
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0097481 C postsynaptic density
9857 O_BomoMSG18873_complete:A_BomoMSG_c26268_g3_i1
114bp
9858 O_BomoMSG18874_5prime_partial:A_BomoMSG_c26268_g3_i2
119bp
9859 O_BomoMSG18875_internal:A_BomoMSG_c26269_g1_i2
216bp
 hypothetical_protein_[Acinetobacter_baumannii]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
9860 O_BomoMSG18876_5prime_partial:A_BomoMSG_c26270_g1_i2
238bp
 RNA-directed_DNA_polymerase_from_mobile_element_jockey_[Danaus_plexippus_plexippus]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
9861 O_BomoMSG18877_internal:A_BomoMSG_c26270_g1_i4
224bp
 PREDICTED:_uncharacterized_protein_LOC105389752_[Plutella_xylostella]
GO:0046872 F metal ion binding
9862 O_BomoMSG18878_5prime_partial:A_BomoMSG_c26270_g1_i4
105bp
9863 O_BomoMSG18879_5prime_partial:A_BomoMSG_c26270_g1_i5
246bp
 RNA-directed_DNA_polymerase_from_mobile_element_jockey_[Danaus_plexippus_plexippus]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
9864 O_BomoMSG1887_5prime_partial:A_BomoMSG_c9298_g1_i1
110bp
9865 O_BomoMSG18880_5prime_partial:A_BomoMSG_c26270_g1_i6
146bp
 PREDICTED:_uncharacterized_protein_LOC105389752_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
9866 O_BomoMSG18881_internal:A_BomoMSG_c26270_g1_i7
287bp
 RNA-directed_DNA_polymerase_from_mobile_element_jockey_[Danaus_plexippus_plexippus]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
9867 O_BomoMSG18882_internal:A_BomoMSG_c26271_g1_i1
148bp
 retinol-binding_protein_pinta_[Bombyx_mori]
9868 O_BomoMSG18883_internal:A_BomoMSG_c26271_g1_i2
138bp
 retinol-binding_protein_pinta_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0016020 C membrane
9869 O_BomoMSG18884_3prime_partial:A_BomoMSG_c26271_g1_i3
157bp
 retinol-binding_protein_pinta_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0016020 C membrane
9870 O_BomoMSG18885_complete:A_BomoMSG_c26271_g1_i3
145bp
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