SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9811 O_BomoMSG18831_3prime_partial:A_BomoMSG_c26250_g1_i1
286bp
 uncharacterized_protein_LOC101741506_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
9812 O_BomoMSG18832_5prime_partial:A_BomoMSG_c26252_g1_i1
351bp
 putative_ribosome-binding_factor_A,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0006364 P rRNA processing
GO:0008150 P biological_process
9813 O_BomoMSG18833_5prime_partial:A_BomoMSG_c26252_g1_i2
156bp
 putative_ribosome-binding_factor_A,_mitochondrial_isoform_X2_[Bombyx_mori]
9814 O_BomoMSG18834_complete:A_BomoMSG_c26253_g1_i1
434bp
 acid_phosphatase_type_7_[Bombyx_mori]
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9815 O_BomoMSG18835_5prime_partial:A_BomoMSG_c26253_g1_i2
442bp
 acid_phosphatase_type_7_[Bombyx_mori]
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9816 O_BomoMSG18836_5prime_partial:A_BomoMSG_c26253_g1_i3
235bp
 acid_phosphatase_type_7_[Bombyx_mori]
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9817 O_BomoMSG18837_complete:A_BomoMSG_c26254_g2_i1
123bp
 uncharacterized_protein_LOC105842979_[Bombyx_mori]
9818 O_BomoMSG18838_complete:A_BomoMSG_c26254_g2_i1
119bp
 uncharacterized_protein_LOC105842979_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0039660 F structural constituent of virion
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075521 P microtubule-dependent intracellular transport of viral material towards nucleus
GO:0075606 P transport of viral material towards nucleus
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
9819 O_BomoMSG18839_complete:A_BomoMSG_c26254_g2_i2
123bp
 uncharacterized_protein_LOC105842979_[Bombyx_mori]
9820 O_BomoMSG1883_internal:A_BomoMSG_c9249_g1_i1
138bp
 vesicle_amine_transport_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
9821 O_BomoMSG18840_complete:A_BomoMSG_c26254_g2_i2
119bp
 uncharacterized_protein_LOC105842979_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0039660 F structural constituent of virion
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075521 P microtubule-dependent intracellular transport of viral material towards nucleus
GO:0075606 P transport of viral material towards nucleus
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
9822 O_BomoMSG18841_5prime_partial:A_BomoMSG_c26254_g3_i1
112bp
 uncharacterized_protein_LOC105842574_[Bombyx_mori]
9823 O_BomoMSG18842_complete:A_BomoMSG_c26256_g1_i1
464bp
 LOW_QUALITY_PROTEIN:_Golgi_pH_regulator_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005244 F voltage-gated ion channel activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034765 P regulation of ion transmembrane transport
9824 O_BomoMSG18843_complete:A_BomoMSG_c26256_g1_i1
157bp
9825 O_BomoMSG18844_5prime_partial:A_BomoMSG_c26256_g1_i2
246bp
 LOW_QUALITY_PROTEIN:_Golgi_pH_regulator_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005244 F voltage-gated ion channel activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008308 F voltage-gated anion channel activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030660 C Golgi-associated vesicle membrane
GO:0032580 C Golgi cisterna membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0043588 P skin development
GO:0051452 P intracellular pH reduction
GO:1903959 P regulation of anion transmembrane transport
9826 O_BomoMSG18845_complete:A_BomoMSG_c26256_g1_i2
157bp
9827 O_BomoMSG18846_complete:A_BomoMSG_c26257_g5_i2
105bp
 uncharacterized_protein_LOC110385076_[Bombyx_mori]
9828 O_BomoMSG18847_complete:A_BomoMSG_c26257_g5_i3
105bp
 uncharacterized_protein_LOC110385076_[Bombyx_mori]
9829 O_BomoMSG18848_5prime_partial:A_BomoMSG_c26259_g2_i1
114bp
9830 O_BomoMSG18849_complete:A_BomoMSG_c26260_g1_i1
110bp
9831 O_BomoMSG1884_5prime_partial:A_BomoMSG_c9286_g1_i1
160bp
 uncharacterized_protein_LOC101743259_[Bombyx_mori]
9832 O_BomoMSG18850_3prime_partial:A_BomoMSG_c26260_g2_i1
295bp
 E3_ubiquitin-protein_ligase_Rnf220_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0090263 P positive regulation of canonical Wnt signaling pathway
9833 O_BomoMSG18851_complete:A_BomoMSG_c26260_g1_i2
110bp
9834 O_BomoMSG18852_3prime_partial:A_BomoMSG_c26260_g2_i2
295bp
 E3_ubiquitin-protein_ligase_Rnf220_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0090263 P positive regulation of canonical Wnt signaling pathway
9835 O_BomoMSG18853_5prime_partial:A_BomoMSG_c26260_g1_i3
134bp
 E3_ubiquitin-protein_ligase_Rnf220_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0090263 P positive regulation of canonical Wnt signaling pathway
9836 O_BomoMSG18854_complete:A_BomoMSG_c26260_g1_i3
110bp
9837 O_BomoMSG18855_5prime_partial:A_BomoMSG_c26261_g1_i1
102bp
 protein_GPR107_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030136 C clathrin-coated vesicle
GO:0032050 F clathrin heavy chain binding
GO:0072583 P clathrin-dependent endocytosis
9838 O_BomoMSG18856_5prime_partial:A_BomoMSG_c26261_g1_i2
124bp
 protein_GPR107_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030136 C clathrin-coated vesicle
GO:0032050 F clathrin heavy chain binding
GO:0072583 P clathrin-dependent endocytosis
9839 O_BomoMSG18857_5prime_partial:A_BomoMSG_c26261_g1_i3
500bp
 protein_GPR107_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030136 C clathrin-coated vesicle
GO:0032050 F clathrin heavy chain binding
GO:0072583 P clathrin-dependent endocytosis
9840 O_BomoMSG18858_complete:A_BomoMSG_c26261_g1_i3
105bp
previous next from show/29137

- SilkBase 1999-2023 -