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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9661 O_BomoMSG18697_complete:A_BomoMSG_c26211_g1_i1
473bp
 pyridine_nucleotide-disulfide_oxidoreductase_domain-containing_protein_1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
9662 O_BomoMSG18698_3prime_partial:A_BomoMSG_c26211_g1_i2
167bp
 pyridine_nucleotide-disulfide_oxidoreductase_domain-containing_protein_1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
9663 O_BomoMSG18699_internal:A_BomoMSG_c26212_g1_i1
367bp
 nucleolar_complex_protein_4_homolog_B_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0042254 P ribosome biogenesis
9664 O_BomoMSG1869_internal:A_BomoMSG_c9144_g1_i1
196bp
 ribosomal_protein_L10_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
9665 O_BomoMSG186_3prime_partial:A_BomoMSG_c762_g1_i2
450bp
 proteasome_26S_non-ATPase_subunit_12_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005838 C proteasome regulatory particle
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0016020 C membrane
GO:0022624 C proteasome accessory complex
GO:0031595 C nuclear proteasome complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0070062 C extracellular exosome
9666 O_BomoMSG18700_5prime_partial:A_BomoMSG_c26212_g1_i1
214bp
9667 O_BomoMSG18701_complete:A_BomoMSG_c26212_g1_i1
171bp
9668 O_BomoMSG18702_complete:A_BomoMSG_c26212_g1_i1
132bp
 Nucleolar_complex_protein_4-like_protein_B,_partial_[Operophtera_brumata]
9669 O_BomoMSG18703_internal:A_BomoMSG_c26212_g1_i2
445bp
 nucleolar_complex_protein_4_homolog_B_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0042254 P ribosome biogenesis
9670 O_BomoMSG18704_5prime_partial:A_BomoMSG_c26212_g1_i2
214bp
9671 O_BomoMSG18705_complete:A_BomoMSG_c26212_g1_i2
171bp
9672 O_BomoMSG18706_complete:A_BomoMSG_c26212_g1_i2
132bp
 Nucleolar_complex_protein_4-like_protein_B,_partial_[Operophtera_brumata]
9673 O_BomoMSG18707_complete:A_BomoMSG_c26213_g1_i2
179bp
 zinc_finger_CCCH_domain-containing_protein_11A_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
9674 O_BomoMSG18708_complete:A_BomoMSG_c26214_g1_i1
295bp
 beta-lactamase-like_protein_2_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9675 O_BomoMSG18709_complete:A_BomoMSG_c26214_g1_i2
295bp
 beta-lactamase-like_protein_2_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9676 O_BomoMSG1870_5prime_partial:A_BomoMSG_c9155_g1_i1
127bp
 ribosomal_protein_L34_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
9677 O_BomoMSG18710_complete:A_BomoMSG_c26214_g1_i3
259bp
 beta-lactamase-like_protein_2_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9678 O_BomoMSG18711_3prime_partial:A_BomoMSG_c26215_g1_i1
392bp
 nuclear_fragile_X_mental_retardation-interacting_protein_1_[Bombyx_mori]
GO:0000492 P box C/D snoRNP assembly
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005726 C perichromatin fibrils
GO:0005730 C nucleolus
GO:0008023 C transcription elongation factor complex
GO:0016363 C nuclear matrix
GO:0022626 C cytosolic ribosome
GO:0030515 F snoRNA binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051117 F ATPase binding
GO:0051259 P protein complex oligomerization
GO:0070761 C pre-snoRNP complex
9679 O_BomoMSG18712_complete:A_BomoMSG_c26215_g1_i1
101bp
9680 O_BomoMSG18713_3prime_partial:A_BomoMSG_c26216_g1_i1
460bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005778 C peroxisomal membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0019904 F protein domain specific binding
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0035195 P gene silencing by miRNA
GO:0042974 F retinoic acid receptor binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070016 F armadillo repeat domain binding
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000036 P regulation of stem cell population maintenance
9681 O_BomoMSG18714_internal:A_BomoMSG_c26216_g1_i2
433bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005778 C peroxisomal membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0019904 F protein domain specific binding
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0035195 P gene silencing by miRNA
GO:0042974 F retinoic acid receptor binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070016 F armadillo repeat domain binding
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000036 P regulation of stem cell population maintenance
9682 O_BomoMSG18715_internal:A_BomoMSG_c26216_g1_i3
264bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005778 C peroxisomal membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0019904 F protein domain specific binding
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0035195 P gene silencing by miRNA
GO:0042974 F retinoic acid receptor binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070016 F armadillo repeat domain binding
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000036 P regulation of stem cell population maintenance
9683 O_BomoMSG18716_internal:A_BomoMSG_c26216_g1_i4
288bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005778 C peroxisomal membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0019904 F protein domain specific binding
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0035195 P gene silencing by miRNA
GO:0042974 F retinoic acid receptor binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070016 F armadillo repeat domain binding
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000036 P regulation of stem cell population maintenance
9684 O_BomoMSG18717_complete:A_BomoMSG_c26217_g1_i1
476bp
 beta-secretase_1_[Bombyx_mori]
GO:0001540 F amyloid-beta binding
GO:0004175 F endopeptidase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0008233 F peptidase activity
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019899 F enzyme binding
GO:0030163 P protein catabolic process
GO:0030424 C axon
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0050435 P amyloid-beta metabolic process
9685 O_BomoMSG18718_internal:A_BomoMSG_c26218_g1_i1
809bp
 multidrug_resistance-associated_protein_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043225 F ATPase-coupled inorganic anion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
9686 O_BomoMSG18719_complete:A_BomoMSG_c26218_g1_i1
124bp
9687 O_BomoMSG1871_internal:A_BomoMSG_c9159_g1_i1
107bp
 dnaJ_homolog_subfamily_C_member_16_precursor_[Bombyx_mori]
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006457 P protein folding
GO:0008270 F zinc ion binding
GO:0009408 P response to heat
GO:0031072 F heat shock protein binding
GO:0046872 F metal ion binding
GO:0051082 F unfolded protein binding
9688 O_BomoMSG18720_3prime_partial:A_BomoMSG_c26218_g1_i2
839bp
 multidrug_resistance-associated_protein_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043225 F ATPase-coupled inorganic anion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
9689 O_BomoMSG18721_complete:A_BomoMSG_c26218_g1_i2
124bp
9690 O_BomoMSG18722_internal:A_BomoMSG_c26218_g1_i3
835bp
 multidrug_resistance-associated_protein_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043225 F ATPase-coupled inorganic anion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0098656 P anion transmembrane transport
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