SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9631 O_BomoMSG1866_internal:A_BomoMSG_c9128_g1_i1
167bp
 alpha-tocopherol_transfer_protein_[Bombyx_mori]
GO:0001890 P placenta development
GO:0001892 P embryonic placenta development
GO:0005215 F transporter activity
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007584 P response to nutrient
GO:0008289 F lipid binding
GO:0008431 F vitamin E binding
GO:0009268 P response to pH
GO:0009636 P response to toxic substance
GO:0019842 F vitamin binding
GO:0032502 P developmental process
GO:0042360 P vitamin E metabolic process
GO:0043325 F phosphatidylinositol-3,4-bisphosphate binding
GO:0046909 P obsolete intermembrane transport
GO:0051180 P vitamin transport
GO:0051452 P intracellular pH reduction
GO:0060548 P negative regulation of cell death
GO:0090212 P negative regulation of establishment of blood-brain barrier
9632 O_BomoMSG18670_complete:A_BomoMSG_c26200_g1_i1
570bp
 DNA_ligase_1_[Bombyx_mori]
9633 O_BomoMSG18671_5prime_partial:A_BomoMSG_c26201_g1_i1
224bp
 PREDICTED:_PR_domain_zinc_finger_protein_5-like_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
9634 O_BomoMSG18672_internal:A_BomoMSG_c26202_g1_i1
359bp
 uncharacterized_protein_LOC101741494_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016540 P protein autoprocessing
GO:0016787 F hydrolase activity
GO:0046598 P positive regulation of viral entry into host cell
GO:0070062 C extracellular exosome
9635 O_BomoMSG18673_3prime_partial:A_BomoMSG_c26202_g1_i2
367bp
 uncharacterized_protein_LOC101741494_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016540 P protein autoprocessing
GO:0016787 F hydrolase activity
GO:0046598 P positive regulation of viral entry into host cell
GO:0070062 C extracellular exosome
9636 O_BomoMSG18674_3prime_partial:A_BomoMSG_c26202_g1_i3
367bp
 uncharacterized_protein_LOC101741494_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005044 F scavenger receptor activity
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016540 P protein autoprocessing
GO:0016787 F hydrolase activity
GO:0046598 P positive regulation of viral entry into host cell
GO:0070062 C extracellular exosome
9637 O_BomoMSG18675_5prime_partial:A_BomoMSG_c26203_g1_i2
190bp
 uncharacterized_protein_LOC101740515_isoform_X1_[Bombyx_mori]
9638 O_BomoMSG18676_complete:A_BomoMSG_c26203_g1_i3
166bp
 uncharacterized_protein_LOC101740515_isoform_X1_[Bombyx_mori]
9639 O_BomoMSG18677_3prime_partial:A_BomoMSG_c26204_g2_i2
176bp
 carboxyl_terminus_of_heat_shock_cognate70_interacting_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0001664 F G protein-coupled receptor binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0019900 F kinase binding
GO:0030018 C Z disc
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0030674 F protein-macromolecule adaptor activity
GO:0030911 F TPR domain binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0031371 C ubiquitin conjugating enzyme complex
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0031943 P regulation of glucocorticoid metabolic process
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0036503 P ERAD pathway
GO:0038128 P ERBB2 signaling pathway
GO:0042405 C nuclear inclusion body
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0046332 F SMAD binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051604 P protein maturation
GO:0051787 F misfolded protein binding
GO:0051865 P protein autoubiquitination
GO:0051879 F Hsp90 protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070534 P protein K63-linked ubiquitination
GO:0071218 P cellular response to misfolded protein
GO:0090035 P positive regulation of chaperone-mediated protein complex assembly
GO:1904264 F ubiquitin protein ligase activity
9640 O_BomoMSG18678_3prime_partial:A_BomoMSG_c26205_g1_i1
243bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
9641 O_BomoMSG18679_5prime_partial:A_BomoMSG_c26205_g1_i1
159bp
 uncharacterized_protein_LOC101740474_[Bombyx_mori]
9642 O_BomoMSG1867_complete:A_BomoMSG_c9132_g1_i1
640bp
 xaa-Pro_aminopeptidase_ApepP_isoform_X1_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010815 P bradykinin catabolic process
GO:0016787 F hydrolase activity
GO:0030145 F manganese ion binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
GO:0070062 C extracellular exosome
9643 O_BomoMSG18680_complete:A_BomoMSG_c26205_g1_i2
405bp
 uncharacterized_protein_LOC101740474_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
9644 O_BomoMSG18681_3prime_partial:A_BomoMSG_c26205_g1_i2
243bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
9645 O_BomoMSG18682_complete:A_BomoMSG_c26205_g1_i2
115bp
9646 O_BomoMSG18683_internal:A_BomoMSG_c26205_g1_i3
228bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
9647 O_BomoMSG18684_3prime_partial:A_BomoMSG_c26205_g1_i4
243bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
9648 O_BomoMSG18685_5prime_partial:A_BomoMSG_c26205_g1_i4
181bp
 uncharacterized_protein_LOC101740474_[Bombyx_mori]
9649 O_BomoMSG18686_complete:A_BomoMSG_c26206_g1_i1
412bp
 beta-arrestin-1-like_[Bombyx_mori]
GO:0001934 P positive regulation of protein phosphorylation
GO:0002092 P positive regulation of receptor internalization
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0007165 P signal transduction
GO:0009968 P negative regulation of signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0031143 C pseudopodium
GO:0031410 C cytoplasmic vesicle
GO:0042995 C cell projection
9650 O_BomoMSG18687_5prime_partial:A_BomoMSG_c26206_g1_i1
214bp
 hypothetical_protein_G5I_03935_[Acromyrmex_echinatior]
9651 O_BomoMSG18688_complete:A_BomoMSG_c26206_g1_i1
112bp
9652 O_BomoMSG18689_complete:A_BomoMSG_c26207_g1_i1
303bp
 TBC1_domain_family_member_7_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0016023 C cytoplasmic vesicle
GO:0017137 F small GTPase binding
GO:0031398 P positive regulation of protein ubiquitination
GO:0031410 C cytoplasmic vesicle
GO:0032007 P negative regulation of TOR signaling
GO:0036064 C ciliary basal body
GO:0070848 P response to growth factor
GO:0090630 P activation of GTPase activity
GO:1902018 P negative regulation of cilium assembly
9653 O_BomoMSG1868_3prime_partial:A_BomoMSG_c9140_g1_i1
124bp
 PREDICTED:_uncharacterized_protein_LOC106140354_[Amyelois_transitella]
9654 O_BomoMSG18690_complete:A_BomoMSG_c26207_g1_i2
303bp
 TBC1_domain_family_member_7_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0016023 C cytoplasmic vesicle
GO:0017137 F small GTPase binding
GO:0031398 P positive regulation of protein ubiquitination
GO:0031410 C cytoplasmic vesicle
GO:0032007 P negative regulation of TOR signaling
GO:0036064 C ciliary basal body
GO:0070848 P response to growth factor
GO:0090630 P activation of GTPase activity
GO:1902018 P negative regulation of cilium assembly
9655 O_BomoMSG18691_complete:A_BomoMSG_c26208_g1_i1
436bp
 cytohesin-1_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030155 P regulation of cell adhesion
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
9656 O_BomoMSG18692_complete:A_BomoMSG_c26208_g1_i1
107bp
9657 O_BomoMSG18693_5prime_partial:A_BomoMSG_c26208_g1_i2
202bp
 cytohesin-1_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030155 P regulation of cell adhesion
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
9658 O_BomoMSG18694_complete:A_BomoMSG_c26208_g1_i4
416bp
 cytohesin-1_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030155 P regulation of cell adhesion
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
9659 O_BomoMSG18695_complete:A_BomoMSG_c26209_g3_i2
193bp
 NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_assembly_factor_3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0032981 P mitochondrial respiratory chain complex I assembly
9660 O_BomoMSG18696_complete:A_BomoMSG_c26209_g3_i2
111bp
previous next from show/29137

- SilkBase 1999-2023 -