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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9331 O_BomoMSG1839_internal:A_BomoMSG_c8934_g1_i1
234bp
 brain_tumor_protein_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006909 P phagocytosis
GO:0007400 P neuroblast fate determination
GO:0007402 P ganglion mother cell fate determination
GO:0007405 P neuroblast proliferation
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007411 P axon guidance
GO:0007419 P ventral cord development
GO:0007420 P brain development
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0008356 P asymmetric cell division
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0009303 P rRNA transcription
GO:0017148 P negative regulation of translation
GO:0022008 P neurogenesis
GO:0030182 P neuron differentiation
GO:0030371 F translation repressor activity
GO:0035282 P segmentation
GO:0043025 C neuronal cell body
GO:0045179 C apical cortex
GO:0045180 C basal cortex
GO:0045182 F translation regulator activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0050767 P regulation of neurogenesis
GO:0051726 P regulation of cell cycle
GO:0055060 P asymmetric neuroblast division resulting in ganglion mother cell formation
GO:1900242 P regulation of synaptic vesicle endocytosis
9332 O_BomoMSG183_5prime_partial:A_BomoMSG_c753_g1_i1
108bp
9333 O_BomoMSG18400_5prime_partial:A_BomoMSG_c26123_g1_i6
109bp
 PREDICTED:_uncharacterized_protein_LOC106720810_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
9334 O_BomoMSG18401_complete:A_BomoMSG_c26123_g1_i7
270bp
 ATP-dependent_DNA_helicase_PIF6_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010521 F telomerase inhibitor activity
GO:0016787 F hydrolase activity
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
GO:0044806 P G-quadruplex DNA unwinding
GO:0051276 P chromosome organization
GO:0051974 P negative regulation of telomerase activity
9335 O_BomoMSG18402_complete:A_BomoMSG_c26123_g1_i7
134bp
 conserved_hypothetical_protein_[Phytophthora_infestans_T30-4]
9336 O_BomoMSG18403_5prime_partial:A_BomoMSG_c26123_g1_i7
119bp
 PREDICTED:_uncharacterized_protein_LOC106720810_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
9337 O_BomoMSG18404_5prime_partial:A_BomoMSG_c26124_g2_i1
349bp
 DNA-binding_protein_Ikaros_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003140 P determination of left/right asymmetry in lateral mesoderm
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007368 P determination of left/right symmetry
GO:0035469 P determination of pancreatic left/right asymmetry
GO:0046872 F metal ion binding
GO:0071908 P determination of intestine left/right asymmetry
9338 O_BomoMSG18405_complete:A_BomoMSG_c26124_g2_i1
163bp
9339 O_BomoMSG18406_complete:A_BomoMSG_c26124_g2_i2
474bp
 DNA-binding_protein_Ikaros_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007275 P multicellular organism development
GO:0007498 P mesoderm development
GO:0016568 P chromatin organization
GO:0030098 P lymphocyte differentiation
GO:0030218 P erythrocyte differentiation
GO:0043234 C protein-containing complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
9340 O_BomoMSG18407_complete:A_BomoMSG_c26124_g2_i2
163bp
9341 O_BomoMSG18408_3prime_partial:A_BomoMSG_c26124_g2_i2
126bp
9342 O_BomoMSG18409_complete:A_BomoMSG_c26124_g2_i3
474bp
 DNA-binding_protein_Ikaros_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007275 P multicellular organism development
GO:0007498 P mesoderm development
GO:0016568 P chromatin organization
GO:0030098 P lymphocyte differentiation
GO:0030218 P erythrocyte differentiation
GO:0043234 C protein-containing complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
9343 O_BomoMSG1840_3prime_partial:A_BomoMSG_c8937_g1_i1
336bp
 LOW_QUALITY_PROTEIN:_TBC1_domain_family_member_31_[Bombyx_mori]
GO:0005813 C centrosome
9344 O_BomoMSG18410_complete:A_BomoMSG_c26124_g2_i3
163bp
9345 O_BomoMSG18411_complete:A_BomoMSG_c26124_g2_i3
117bp
9346 O_BomoMSG18412_internal:A_BomoMSG_c26125_g1_i1
541bp
 rab-like_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
9347 O_BomoMSG18413_complete:A_BomoMSG_c26125_g1_i1
108bp
9348 O_BomoMSG18414_3prime_partial:A_BomoMSG_c26125_g1_i1
103bp
9349 O_BomoMSG18415_3prime_partial:A_BomoMSG_c26125_g1_i2
595bp
 rab-like_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
9350 O_BomoMSG18416_complete:A_BomoMSG_c26125_g1_i2
108bp
9351 O_BomoMSG18417_3prime_partial:A_BomoMSG_c26125_g1_i2
103bp
9352 O_BomoMSG18418_complete:A_BomoMSG_c26126_g1_i1
902bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9353 O_BomoMSG18419_complete:A_BomoMSG_c26126_g1_i1
260bp
 uncharacterized_protein_LOC105841881_[Bombyx_mori]
9354 O_BomoMSG1841_internal:A_BomoMSG_c8945_g1_i1
149bp
 uncharacterized_protein_LOC101738019_[Bombyx_mori]
9355 O_BomoMSG18420_5prime_partial:A_BomoMSG_c26127_g1_i1
471bp
 TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_[Bombyx_mori]
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0043966 P histone H3 acetylation
9356 O_BomoMSG18421_5prime_partial:A_BomoMSG_c26127_g1_i2
113bp
 TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_[Bombyx_mori]
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0015629 C actin cytoskeleton
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0033276 C transcription factor TFTC complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0043231 C intracellular membrane-bounded organelle
GO:0044212 F transcription cis-regulatory region binding
GO:0046983 F protein dimerization activity
GO:1901796 P regulation of signal transduction by p53 class mediator
9357 O_BomoMSG18422_complete:A_BomoMSG_c26127_g1_i3
657bp
 TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_[Bombyx_mori]
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0043966 P histone H3 acetylation
9358 O_BomoMSG18423_3prime_partial:A_BomoMSG_c26128_g1_i1
476bp
 LOW_QUALITY_PROTEIN:_protein_SMG9_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
9359 O_BomoMSG18424_internal:A_BomoMSG_c26128_g1_i2
461bp
 LOW_QUALITY_PROTEIN:_protein_SMG9_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
9360 O_BomoMSG18425_internal:A_BomoMSG_c26129_g1_i1
173bp
 major_facilitator_superfamily_domain-containing_protein_6_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
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