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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9181 O_BomoMSG18264_3prime_partial:A_BomoMSG_c26083_g1_i1
903bp
 ATP-dependent_RNA_helicase_DDX24_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016070 P RNA metabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
9182 O_BomoMSG18265_complete:A_BomoMSG_c26083_g1_i1
185bp
9183 O_BomoMSG18266_complete:A_BomoMSG_c26084_g1_i1
300bp
 LOW_QUALITY_PROTEIN:_transcription_initiation_factor_TFIID_subunit_11_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0046982 F protein heterodimerization activity
GO:0051123 P RNA polymerase II preinitiation complex assembly
9184 O_BomoMSG18267_5prime_partial:A_BomoMSG_c26084_g1_i2
272bp
 LOW_QUALITY_PROTEIN:_transcription_initiation_factor_TFIID_subunit_11_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0046982 F protein heterodimerization activity
GO:0051123 P RNA polymerase II preinitiation complex assembly
9185 O_BomoMSG18268_complete:A_BomoMSG_c26084_g1_i3
300bp
 LOW_QUALITY_PROTEIN:_transcription_initiation_factor_TFIID_subunit_11_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0046982 F protein heterodimerization activity
GO:0051123 P RNA polymerase II preinitiation complex assembly
9186 O_BomoMSG18269_5prime_partial:A_BomoMSG_c26084_g1_i4
246bp
 LOW_QUALITY_PROTEIN:_transcription_initiation_factor_TFIID_subunit_11_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0046982 F protein heterodimerization activity
GO:0051123 P RNA polymerase II preinitiation complex assembly
9187 O_BomoMSG1826_5prime_partial:A_BomoMSG_c8880_g1_i1
126bp
 nudix_hydrolase_8_isoform_X2_[Bombyx_mori]
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0009611 P response to wounding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9188 O_BomoMSG18270_3prime_partial:A_BomoMSG_c26085_g1_i1
194bp
 tetratricopeptide_repeat_protein_27_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
9189 O_BomoMSG18271_5prime_partial:A_BomoMSG_c26085_g1_i1
160bp
9190 O_BomoMSG18272_internal:A_BomoMSG_c26085_g1_i2
614bp
 tetratricopeptide_repeat_protein_27_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
9191 O_BomoMSG18273_5prime_partial:A_BomoMSG_c26085_g1_i2
160bp
9192 O_BomoMSG18274_internal:A_BomoMSG_c26085_g1_i3
481bp
 tetratricopeptide_repeat_protein_27_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
9193 O_BomoMSG18275_5prime_partial:A_BomoMSG_c26085_g1_i3
160bp
9194 O_BomoMSG18276_internal:A_BomoMSG_c26085_g1_i4
383bp
 tetratricopeptide_repeat_protein_27_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
9195 O_BomoMSG18277_5prime_partial:A_BomoMSG_c26085_g1_i4
160bp
9196 O_BomoMSG18278_complete:A_BomoMSG_c26086_g1_i1
274bp
 exonuclease_3'-5'_domain-containing_protein_2_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000729 P DNA double-strand break processing
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006302 P double-strand break repair
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9197 O_BomoMSG18279_3prime_partial:A_BomoMSG_c26086_g1_i2
401bp
 exonuclease_3'-5'_domain-containing_protein_2_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000729 P DNA double-strand break processing
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006302 P double-strand break repair
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9198 O_BomoMSG1827_5prime_partial:A_BomoMSG_c8894_g1_i1
159bp
 rho_guanine_nucleotide_exchange_factor_18_[Bombyx_mori]
9199 O_BomoMSG18280_5prime_partial:A_BomoMSG_c26086_g1_i2
123bp
9200 O_BomoMSG18281_5prime_partial:A_BomoMSG_c26086_g1_i2
108bp
9201 O_BomoMSG18282_internal:A_BomoMSG_c26086_g1_i3
120bp
9202 O_BomoMSG18283_5prime_partial:A_BomoMSG_c26086_g1_i3
101bp
9203 O_BomoMSG18284_3prime_partial:A_BomoMSG_c26086_g1_i3
100bp
9204 O_BomoMSG18285_internal:A_BomoMSG_c26086_g1_i4
247bp
 exonuclease_3'-5'_domain-containing_protein_2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006259 P DNA metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9205 O_BomoMSG18286_5prime_partial:A_BomoMSG_c26086_g1_i4
123bp
9206 O_BomoMSG18287_5prime_partial:A_BomoMSG_c26086_g1_i4
108bp
9207 O_BomoMSG18288_complete:A_BomoMSG_c26086_g1_i5
384bp
 exonuclease_3'-5'_domain-containing_protein_2_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000729 P DNA double-strand break processing
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006302 P double-strand break repair
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9208 O_BomoMSG18289_complete:A_BomoMSG_c26086_g1_i7
182bp
 exonuclease_3'-5'_domain-containing_protein_2_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000729 P DNA double-strand break processing
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006302 P double-strand break repair
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9209 O_BomoMSG1828_5prime_partial:A_BomoMSG_c8894_g1_i1
122bp
9210 O_BomoMSG18290_3prime_partial:A_BomoMSG_c26086_g1_i7
179bp
 exonuclease_3'-5'_domain-containing_protein_2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006259 P DNA metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
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