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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9211 O_BomoMSG18291_5prime_partial:A_BomoMSG_c26086_g1_i7
123bp
9212 O_BomoMSG18292_5prime_partial:A_BomoMSG_c26086_g1_i7
108bp
9213 O_BomoMSG18293_5prime_partial:A_BomoMSG_c26087_g1_i2
107bp
 platelet-activating_factor_acetylhydrolase_alpha_subunit-like_protein_[Bombyx_mori]
GO:0003847 F 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
9214 O_BomoMSG18294_complete:A_BomoMSG_c26087_g1_i3
226bp
 platelet-activating_factor_acetylhydrolase_alpha_subunit-like_protein_[Bombyx_mori]
GO:0003847 F 1-alkyl-2-acetylglycerophosphocholine esterase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
9215 O_BomoMSG18295_3prime_partial:A_BomoMSG_c26088_g1_i1
289bp
 bromodomain-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0000812 C Swr1 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
9216 O_BomoMSG18296_complete:A_BomoMSG_c26088_g1_i1
148bp
9217 O_BomoMSG18297_5prime_partial:A_BomoMSG_c26091_g1_i1
196bp
 arginyl-tRNA--protein_transferase_1_[Bombyx_mori]
GO:0004057 F arginyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016598 P protein arginylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
9218 O_BomoMSG18298_complete:A_BomoMSG_c26091_g1_i2
493bp
 arginyl-tRNA--protein_transferase_1_[Bombyx_mori]
GO:0004057 F arginyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016598 P protein arginylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
9219 O_BomoMSG18299_5prime_partial:A_BomoMSG_c26092_g2_i1
654bp
 hybrid_signal_transduction_histidine_kinase_I_[Bombyx_mori]
9220 O_BomoMSG1829_5prime_partial:A_BomoMSG_c8894_g1_i1
113bp
9221 O_BomoMSG182_3prime_partial:A_BomoMSG_c753_g1_i1
124bp
9222 O_BomoMSG18300_5prime_partial:A_BomoMSG_c26092_g2_i2
558bp
 hybrid_signal_transduction_histidine_kinase_I_[Bombyx_mori]
9223 O_BomoMSG18301_complete:A_BomoMSG_c26093_g1_i1
143bp
 AP-2_complex_subunit_sigma_[Solenopsis_invicta]
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030121 C AP-1 adaptor complex
GO:0030122 C AP-2 adaptor complex
9224 O_BomoMSG18302_complete:A_BomoMSG_c26093_g1_i2
143bp
 AP-2_complex_subunit_sigma_[Solenopsis_invicta]
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030121 C AP-1 adaptor complex
GO:0030122 C AP-2 adaptor complex
9225 O_BomoMSG18303_complete:A_BomoMSG_c26094_g1_i1
291bp
 general_transcription_factor_IIH_subunit_3_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003684 F damaged DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006412 P translation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008135 F translation factor activity, RNA binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0046872 F metal ion binding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
9226 O_BomoMSG18304_5prime_partial:A_BomoMSG_c26094_g1_i2
110bp
 PREDICTED:_general_transcription_factor_IIH_subunit_3_[Papilio_polytes]
GO:0000439 C transcription factor TFIIH core complex
GO:0003684 F damaged DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006412 P translation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008135 F translation factor activity, RNA binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0046872 F metal ion binding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
9227 O_BomoMSG18305_5prime_partial:A_BomoMSG_c26095_g1_i1
299bp
 general_transcription_factor_IIE_subunit_1_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
9228 O_BomoMSG18306_complete:A_BomoMSG_c26095_g1_i1
222bp
9229 O_BomoMSG18307_complete:A_BomoMSG_c26095_g1_i2
422bp
 general_transcription_factor_IIE_subunit_1_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
9230 O_BomoMSG18308_complete:A_BomoMSG_c26095_g1_i2
222bp
9231 O_BomoMSG18309_complete:A_BomoMSG_c26095_g1_i3
422bp
 general_transcription_factor_IIE_subunit_1_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
9232 O_BomoMSG1830_5prime_partial:A_BomoMSG_c8911_g1_i1
122bp
 zinc_finger_protein_596_[Bombyx_mori]
9233 O_BomoMSG18310_complete:A_BomoMSG_c26095_g1_i3
222bp
9234 O_BomoMSG18311_5prime_partial:A_BomoMSG_c26096_g1_i1
232bp
 glucose-6-phosphate_1-dehydrogenase_[Bombyx_mori]
GO:0004345 F glucose-6-phosphate dehydrogenase activity
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0006098 P pentose-phosphate shunt
GO:0006739 P NADP metabolic process
GO:0016491 F oxidoreductase activity
GO:0050661 F NADP binding
GO:0051156 P glucose 6-phosphate metabolic process
GO:0055114 P obsolete oxidation-reduction process
9235 O_BomoMSG18312_5prime_partial:A_BomoMSG_c26096_g1_i3
275bp
 glucose-6-phosphate_1-dehydrogenase_[Bombyx_mori]
GO:0004345 F glucose-6-phosphate dehydrogenase activity
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0006098 P pentose-phosphate shunt
GO:0006739 P NADP metabolic process
GO:0016491 F oxidoreductase activity
GO:0050661 F NADP binding
GO:0051156 P glucose 6-phosphate metabolic process
GO:0055114 P obsolete oxidation-reduction process
9236 O_BomoMSG18313_3prime_partial:A_BomoMSG_c26097_g1_i1
296bp
 LOW_QUALITY_PROTEIN:_CREB-binding_protein_[Bombyx_mori]
9237 O_BomoMSG18314_5prime_partial:A_BomoMSG_c26097_g1_i1
109bp
9238 O_BomoMSG18315_3prime_partial:A_BomoMSG_c26097_g1_i2
300bp
 LOW_QUALITY_PROTEIN:_CREB-binding_protein_[Bombyx_mori]
9239 O_BomoMSG18316_5prime_partial:A_BomoMSG_c26097_g1_i2
109bp
9240 O_BomoMSG18317_internal:A_BomoMSG_c26097_g1_i3
320bp
 LOW_QUALITY_PROTEIN:_CREB-binding_protein_[Bombyx_mori]
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