SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9151 O_BomoMSG18237_5prime_partial:A_BomoMSG_c26082_g1_i1
495bp
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
9152 O_BomoMSG18238_5prime_partial:A_BomoMSG_c26082_g1_i1
237bp
9153 O_BomoMSG18239_complete:A_BomoMSG_c26082_g1_i1
191bp
9154 O_BomoMSG1823_5prime_partial:A_BomoMSG_c8875_g1_i1
593bp
 probable_Ufm1-specific_protease_2_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0012505 C endomembrane system
GO:0016787 F hydrolase activity
GO:0016790 F thiolester hydrolase activity
GO:0071567 F UFM1 hydrolase activity
9155 O_BomoMSG18240_5prime_partial:A_BomoMSG_c26082_g1_i1
118bp
9156 O_BomoMSG18241_3prime_partial:A_BomoMSG_c26082_g1_i2
516bp
 protein_IWS1_homolog_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
9157 O_BomoMSG18242_5prime_partial:A_BomoMSG_c26082_g1_i2
495bp
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
9158 O_BomoMSG18243_5prime_partial:A_BomoMSG_c26082_g1_i2
237bp
9159 O_BomoMSG18244_complete:A_BomoMSG_c26082_g1_i2
191bp
9160 O_BomoMSG18245_complete:A_BomoMSG_c26082_g1_i2
125bp
9161 O_BomoMSG18246_3prime_partial:A_BomoMSG_c26082_g2_i1
187bp
9162 O_BomoMSG18247_5prime_partial:A_BomoMSG_c26082_g2_i1
181bp
 protein_IWS1_homolog_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
9163 O_BomoMSG18248_internal:A_BomoMSG_c26082_g1_i3
402bp
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
9164 O_BomoMSG18249_internal:A_BomoMSG_c26082_g1_i3
401bp
 protein_IWS1_homolog_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
9165 O_BomoMSG1824_internal:A_BomoMSG_c8876_g1_i1
293bp
 uncharacterized_protein_LOC101737811_isoform_X3_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000323 C lytic vacuole
GO:0000775 C chromosome, centromeric region
GO:0005515 F protein binding
GO:0005694 C chromosome
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005813 C centrosome
GO:0006281 P DNA repair
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006914 P autophagy
GO:0006974 P cellular response to DNA damage stimulus
GO:0007051 P spindle organization
GO:0007059 P chromosome segregation
GO:0010508 P positive regulation of autophagy
GO:0017124 F SH3 domain binding
GO:0030496 C midbody
GO:0032465 P regulation of cytokinesis
GO:0032801 P receptor catabolic process
GO:0035493 P SNARE complex assembly
GO:0043234 C protein-containing complex
GO:0045335 C phagocytic vesicle
GO:0046718 P viral entry into host cell
GO:0051297 P centrosome cycle
GO:0051684 P maintenance of Golgi location
GO:0060627 P regulation of vesicle-mediated transport
GO:0070418 C DNA-dependent protein kinase complex
GO:0071900 P regulation of protein serine/threonine kinase activity
GO:0097680 P double-strand break repair via classical nonhomologous end joining
9166 O_BomoMSG18250_5prime_partial:A_BomoMSG_c26082_g1_i3
237bp
9167 O_BomoMSG18251_complete:A_BomoMSG_c26082_g1_i3
191bp
9168 O_BomoMSG18252_internal:A_BomoMSG_c26082_g1_i4
483bp
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
9169 O_BomoMSG18253_internal:A_BomoMSG_c26082_g1_i4
482bp
 protein_IWS1_homolog_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
9170 O_BomoMSG18254_5prime_partial:A_BomoMSG_c26082_g1_i4
237bp
9171 O_BomoMSG18255_complete:A_BomoMSG_c26082_g1_i4
191bp
9172 O_BomoMSG18256_internal:A_BomoMSG_c26082_g1_i5
325bp
 protein_IWS1_homolog_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
9173 O_BomoMSG18257_internal:A_BomoMSG_c26082_g1_i5
325bp
 hypothetical_protein_RR46_01019,_partial_[Papilio_xuthus]
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
9174 O_BomoMSG18258_5prime_partial:A_BomoMSG_c26082_g1_i5
237bp
9175 O_BomoMSG18259_5prime_partial:A_BomoMSG_c26082_g1_i5
172bp
9176 O_BomoMSG1825_3prime_partial:A_BomoMSG_c8876_g1_i1
130bp
9177 O_BomoMSG18260_internal:A_BomoMSG_c26082_g1_i6
431bp
 protein_IWS1_homolog_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
9178 O_BomoMSG18261_internal:A_BomoMSG_c26082_g1_i6
431bp
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
9179 O_BomoMSG18262_5prime_partial:A_BomoMSG_c26082_g1_i6
237bp
9180 O_BomoMSG18263_complete:A_BomoMSG_c26082_g1_i6
191bp
previous next from show/29137

- SilkBase 1999-2023 -