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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9121 O_BomoMSG1820_5prime_partial:A_BomoMSG_c8874_g1_i1
124bp
9122 O_BomoMSG18210_complete:A_BomoMSG_c26073_g1_i1
227bp
 methyltransferase-like_26_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
9123 O_BomoMSG18211_5prime_partial:A_BomoMSG_c26074_g1_i1
419bp
 nitric_oxide_synthase_[Bombyx_mori]
GO:0004517 F nitric-oxide synthase activity
GO:0005506 F iron ion binding
GO:0005516 F calmodulin binding
GO:0006809 P nitric oxide biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
9124 O_BomoMSG18212_internal:A_BomoMSG_c26075_g1_i1
486bp
 RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0004721 F phosphoprotein phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006366 P transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0010458 P exit from mitosis
GO:0015629 C actin cytoskeleton
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0030496 C midbody
GO:0050434 P positive regulation of viral transcription
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0061052 P negative regulation of cell growth involved in cardiac muscle cell development
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
9125 O_BomoMSG18213_internal:A_BomoMSG_c26075_g1_i2
466bp
 RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0004721 F phosphoprotein phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0010458 P exit from mitosis
GO:0015629 C actin cytoskeleton
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0030496 C midbody
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0061052 P negative regulation of cell growth involved in cardiac muscle cell development
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
9126 O_BomoMSG18214_internal:A_BomoMSG_c26075_g1_i3
533bp
 RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0004721 F phosphoprotein phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006366 P transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0010458 P exit from mitosis
GO:0015629 C actin cytoskeleton
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0030496 C midbody
GO:0050434 P positive regulation of viral transcription
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0061052 P negative regulation of cell growth involved in cardiac muscle cell development
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
9127 O_BomoMSG18215_3prime_partial:A_BomoMSG_c26075_g1_i3
110bp
9128 O_BomoMSG18216_internal:A_BomoMSG_c26075_g1_i4
334bp
 RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X1_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
9129 O_BomoMSG18217_internal:A_BomoMSG_c26076_g1_i1
430bp
 phosphorylated_CTD-interacting_factor_1_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0010923 P negative regulation of phosphatase activity
GO:0015630 C microtubule cytoskeleton
GO:0045171 C intercellular bridge
9130 O_BomoMSG18218_5prime_partial:A_BomoMSG_c26076_g1_i1
157bp
9131 O_BomoMSG18219_complete:A_BomoMSG_c26076_g1_i1
103bp
9132 O_BomoMSG1821_3prime_partial:A_BomoMSG_c8874_g1_i1
117bp
 uncharacterized_protein_LOC101741146_[Bombyx_mori]
9133 O_BomoMSG18220_5prime_partial:A_BomoMSG_c26077_g1_i1
654bp
 leucine-rich_PPR_motif-containing_protein,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
9134 O_BomoMSG18221_5prime_partial:A_BomoMSG_c26077_g1_i2
1016bp
 leucine-rich_PPR_motif-containing_protein,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
9135 O_BomoMSG18222_complete:A_BomoMSG_c26077_g1_i3
335bp
 leucine-rich_PPR_motif-containing_protein,_mitochondrial_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0048471 C perinuclear region of cytoplasm
GO:0048487 F beta-tubulin binding
GO:0051015 F actin filament binding
GO:0051028 P mRNA transport
9136 O_BomoMSG18223_internal:A_BomoMSG_c26078_g1_i1
299bp
 uncharacterized_protein_LOC101746579_isoform_X2_[Bombyx_mori]
9137 O_BomoMSG18224_internal:A_BomoMSG_c26078_g1_i2
113bp
 uncharacterized_protein_LOC101746579_isoform_X2_[Bombyx_mori]
9138 O_BomoMSG18225_3prime_partial:A_BomoMSG_c26078_g1_i3
438bp
 uncharacterized_protein_LOC101746579_isoform_X1_[Bombyx_mori]
9139 O_BomoMSG18226_internal:A_BomoMSG_c26079_g10_i1
99bp
9140 O_BomoMSG18227_5prime_partial:A_BomoMSG_c26080_g1_i1
162bp
 uncharacterized_protein_LOC101740611_[Bombyx_mori]
9141 O_BomoMSG18228_complete:A_BomoMSG_c26080_g1_i1
114bp
9142 O_BomoMSG18229_complete:A_BomoMSG_c26080_g1_i2
184bp
 uncharacterized_protein_LOC101740611_[Bombyx_mori]
9143 O_BomoMSG1822_complete:A_BomoMSG_c8874_g1_i1
101bp
9144 O_BomoMSG18230_complete:A_BomoMSG_c26080_g1_i2
114bp
9145 O_BomoMSG18231_complete:A_BomoMSG_c26081_g3_i1
177bp
 uncharacterized_protein_LOC101745090_[Bombyx_mori]
9146 O_BomoMSG18232_5prime_partial:A_BomoMSG_c26081_g4_i6
301bp
 transcriptional_adapter_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0070461 C SAGA-type complex
9147 O_BomoMSG18233_complete:A_BomoMSG_c26081_g7_i1
146bp
 ecdysteroid-regulated_16_kDa_protein_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
9148 O_BomoMSG18234_complete:A_BomoMSG_c26081_g7_i1
115bp
9149 O_BomoMSG18235_complete:A_BomoMSG_c26081_g7_i1
107bp
9150 O_BomoMSG18236_internal:A_BomoMSG_c26082_g1_i1
508bp
 protein_IWS1_homolog_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010793 P regulation of mRNA export from nucleus
GO:0050684 P regulation of mRNA processing
GO:0051028 P mRNA transport
GO:0090239 P regulation of histone H4 acetylation
GO:2001253 P regulation of histone H3-K36 trimethylation
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