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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9031 O_BomoMSG18129_complete:A_BomoMSG_c26046_g1_i2
226bp
 mitochondrial_import_inner_membrane_translocase_subunit_Tim21_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005744 C TIM23 mitochondrial import inner membrane translocase complex
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030150 P protein import into mitochondrial matrix
GO:0031966 C mitochondrial membrane
9032 O_BomoMSG1812_internal:A_BomoMSG_c8847_g1_i1
107bp
 myotubularin-related_protein_9_[Bombyx_mori]
GO:0005737 C cytoplasm
9033 O_BomoMSG18130_complete:A_BomoMSG_c26047_g1_i1
265bp
 lys-63-specific_deubiquitinase_BRCC36_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
9034 O_BomoMSG18131_5prime_partial:A_BomoMSG_c26047_g1_i2
214bp
 lys-63-specific_deubiquitinase_BRCC36_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
9035 O_BomoMSG18132_5prime_partial:A_BomoMSG_c26048_g1_i1
261bp
 rab5_GDP/GTP_exchange_factor_[Bombyx_mori]
9036 O_BomoMSG18133_complete:A_BomoMSG_c26048_g1_i1
122bp
9037 O_BomoMSG18134_5prime_partial:A_BomoMSG_c26048_g1_i2
392bp
 rab5_GDP/GTP_exchange_factor_[Bombyx_mori]
GO:0001933 P negative regulation of protein phosphorylation
GO:0002686 P negative regulation of leukocyte migration
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006612 P protein targeting to membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016567 P protein ubiquitination
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0031982 C vesicle
GO:0033004 P negative regulation of mast cell activation
GO:0043305 P negative regulation of mast cell degranulation
GO:0043547 P positive regulation of GTPase activity
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046872 F metal ion binding
GO:0048261 P negative regulation of receptor-mediated endocytosis
GO:0050728 P negative regulation of inflammatory response
GO:0055037 C recycling endosome
GO:0060368 P regulation of Fc receptor mediated stimulatory signaling pathway
GO:0061630 F ubiquitin protein ligase activity
GO:1900165 P negative regulation of interleukin-6 production
GO:1900235 P negative regulation of Kit signaling pathway
9038 O_BomoMSG18135_complete:A_BomoMSG_c26048_g1_i2
122bp
9039 O_BomoMSG18136_internal:A_BomoMSG_c26049_g1_i2
356bp
 uncharacterized_protein_LOC101745347_isoform_X2_[Bombyx_mori]
9040 O_BomoMSG18137_complete:A_BomoMSG_c26049_g1_i2
102bp
9041 O_BomoMSG18138_3prime_partial:A_BomoMSG_c26049_g1_i3
234bp
 uncharacterized_protein_LOC101745347_isoform_X5_[Bombyx_mori]
9042 O_BomoMSG18139_complete:A_BomoMSG_c26050_g1_i1
114bp
9043 O_BomoMSG1813_internal:A_BomoMSG_c8851_g1_i1
106bp
9044 O_BomoMSG18140_complete:A_BomoMSG_c26050_g1_i2
114bp
9045 O_BomoMSG18141_complete:A_BomoMSG_c26050_g1_i3
114bp
9046 O_BomoMSG18142_internal:A_BomoMSG_c26051_g1_i1
726bp
 microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005903 C brush border
GO:0005925 C focal adhesion
GO:0008092 F cytoskeletal protein binding
GO:0008307 F structural constituent of muscle
GO:0030054 C cell junction
GO:0030056 C hemidesmosome
GO:0030506 F ankyrin binding
GO:0031581 P hemidesmosome assembly
GO:0042383 C sarcolemma
GO:0043292 C contractile fiber
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0070062 C extracellular exosome
9047 O_BomoMSG18143_complete:A_BomoMSG_c26051_g1_i1
285bp
9048 O_BomoMSG18144_complete:A_BomoMSG_c26051_g1_i1
223bp
9049 O_BomoMSG18145_5prime_partial:A_BomoMSG_c26051_g1_i1
141bp
9050 O_BomoMSG18146_3prime_partial:A_BomoMSG_c26051_g1_i1
129bp
9051 O_BomoMSG18147_complete:A_BomoMSG_c26051_g1_i1
104bp
9052 O_BomoMSG18148_3prime_partial:A_BomoMSG_c26052_g2_i1
131bp
 PREDICTED:_N-acylneuraminate-9-phosphatase,_partial_[Amyelois_transitella]
9053 O_BomoMSG18149_complete:A_BomoMSG_c26052_g2_i2
738bp
 neurochondrin_homolog_[Bombyx_mori]
GO:0003012 P muscle system process
GO:0003674 F molecular_function
GO:0030425 C dendrite
GO:0043025 C neuronal cell body
9054 O_BomoMSG1814_internal:A_BomoMSG_c8855_g1_i1
259bp
 NUAK_family_SNF1-like_kinase_1_isoform_X3_[Bombyx_mori]
9055 O_BomoMSG18150_complete:A_BomoMSG_c26052_g2_i3
738bp
 neurochondrin_homolog_[Bombyx_mori]
GO:0003012 P muscle system process
GO:0003674 F molecular_function
GO:0030425 C dendrite
GO:0043025 C neuronal cell body
9056 O_BomoMSG18151_complete:A_BomoMSG_c26054_g1_i1
302bp
 interphase_cyctoplasmic_foci_protein_45_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0005525 F GTP binding
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008193 F tRNA guanylyltransferase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
9057 O_BomoMSG18152_3prime_partial:A_BomoMSG_c26055_g1_i1
602bp
 calpain-11_[Bombyx_mori]
GO:0001669 C acrosomal vesicle
GO:0004198 F calcium-dependent cysteine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
9058 O_BomoMSG18153_5prime_partial:A_BomoMSG_c26055_g1_i1
155bp
9059 O_BomoMSG18154_complete:A_BomoMSG_c26055_g1_i1
125bp
9060 O_BomoMSG18155_internal:A_BomoMSG_c26055_g1_i2
442bp
 calpain-11_[Bombyx_mori]
GO:0001669 C acrosomal vesicle
GO:0004198 F calcium-dependent cysteine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
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