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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8971 O_BomoMSG18075_internal:A_BomoMSG_c26033_g1_i2
384bp
 DNA_polymerase_alpha_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000785 C chromatin
GO:0001882 F nucleoside binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005658 C alpha DNA polymerase:primase complex
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0008283 P cell population proliferation
GO:0008408 F 3'-5' exonuclease activity
GO:0016363 C nuclear matrix
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8972 O_BomoMSG18076_3prime_partial:A_BomoMSG_c26033_g1_i3
867bp
 DNA_polymerase_alpha_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000785 C chromatin
GO:0001882 F nucleoside binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005658 C alpha DNA polymerase:primase complex
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0008283 P cell population proliferation
GO:0008408 F 3'-5' exonuclease activity
GO:0016363 C nuclear matrix
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8973 O_BomoMSG18077_3prime_partial:A_BomoMSG_c26034_g1_i1
217bp
 uncharacterized_protein_LOC101743157_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8974 O_BomoMSG18078_complete:A_BomoMSG_c26034_g1_i1
103bp
8975 O_BomoMSG18079_internal:A_BomoMSG_c26034_g1_i2
198bp
 uncharacterized_protein_LOC101743157_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8976 O_BomoMSG1807_internal:A_BomoMSG_c8818_g1_i1
193bp
 testin_[Bombyx_mori]
8977 O_BomoMSG18080_complete:A_BomoMSG_c26034_g1_i2
103bp
8978 O_BomoMSG18081_internal:A_BomoMSG_c26034_g1_i3
101bp
 uncharacterized_protein_LOC101743157_isoform_X2_[Bombyx_mori]
8979 O_BomoMSG18082_internal:A_BomoMSG_c26034_g1_i4
175bp
 uncharacterized_protein_LOC101743157_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8980 O_BomoMSG18083_complete:A_BomoMSG_c26034_g1_i4
103bp
8981 O_BomoMSG18084_5prime_partial:A_BomoMSG_c26034_g2_i1
108bp
 uncharacterized_protein_LOC101743157_isoform_X1_[Bombyx_mori]
8982 O_BomoMSG18085_complete:A_BomoMSG_c26035_g1_i1
570bp
 PREDICTED:_zinc_finger_BED_domain-containing_protein_4-like_[Vollenhovia_emeryi]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0046983 F protein dimerization activity
8983 O_BomoMSG18086_5prime_partial:A_BomoMSG_c26037_g1_i1
545bp
 AP-2_complex_subunit_alpha_[Bombyx_mori]
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030131 C clathrin adaptor complex
GO:0048488 P synaptic vesicle endocytosis
8984 O_BomoMSG18087_complete:A_BomoMSG_c26037_g1_i1
139bp
8985 O_BomoMSG18088_3prime_partial:A_BomoMSG_c26037_g2_i1
384bp
 AP-2_complex_subunit_alpha_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030131 C clathrin adaptor complex
GO:0048488 P synaptic vesicle endocytosis
8986 O_BomoMSG18089_complete:A_BomoMSG_c26037_g2_i1
103bp
8987 O_BomoMSG1808_internal:A_BomoMSG_c8828_g1_i1
223bp
 arf-GAP_with_coiled-coil,_ANK_repeat_and_PH_domain-containing_protein_2-like_[Helicoverpa_armigera]
GO:0005096 F GTPase activator activity
GO:0005768 C endosome
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0036010 P protein localization to endosome
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:1990090 P cellular response to nerve growth factor stimulus
8988 O_BomoMSG18090_5prime_partial:A_BomoMSG_c26038_g1_i1
668bp
 rab3_GTPase-activating_protein_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0043547 P positive regulation of GTPase activity
8989 O_BomoMSG18091_complete:A_BomoMSG_c26038_g1_i1
234bp
8990 O_BomoMSG18092_complete:A_BomoMSG_c26039_g1_i1
504bp
 ADP-ribosylation_factor_GTPase-activating_protein_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
8991 O_BomoMSG18093_complete:A_BomoMSG_c26039_g1_i1
393bp
8992 O_BomoMSG18094_complete:A_BomoMSG_c26039_g2_i1
119bp
8993 O_BomoMSG18095_complete:A_BomoMSG_c26039_g2_i2
420bp
 eukaryotic_initiation_factor_5C_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007616 P long-term memory
GO:0016199 P axon midline choice point recognition
GO:0017148 P negative regulation of translation
GO:0030175 C filopodium
GO:0030424 C axon
GO:0030707 P ovarian follicle cell development
GO:0031369 F translation initiation factor binding
GO:0043022 F ribosome binding
GO:0043025 C neuronal cell body
GO:0044295 C axonal growth cone
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048663 P neuron fate commitment
GO:0051491 P positive regulation of filopodium assembly
8994 O_BomoMSG18096_complete:A_BomoMSG_c26039_g2_i2
211bp
8995 O_BomoMSG18097_complete:A_BomoMSG_c26039_g2_i2
150bp
 hypothetical_protein_ALC62_10517_[Cyphomyrmex_costatus]
8996 O_BomoMSG18098_complete:A_BomoMSG_c26039_g2_i2
119bp
8997 O_BomoMSG18099_5prime_partial:A_BomoMSG_c26040_g1_i5
164bp
 protein_neuralized_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007399 P nervous system development
GO:0007419 P ventral cord development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007498 P mesoderm development
GO:0007616 P long-term memory
GO:0008104 P protein localization
GO:0008270 F zinc ion binding
GO:0008356 P asymmetric cell division
GO:0008593 P regulation of Notch signaling pathway
GO:0016360 P sensory organ precursor cell fate determination
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0030718 P germ-line stem cell population maintenance
GO:0031987 P locomotion involved in locomotory behavior
GO:0042048 P olfactory behavior
GO:0045314 P regulation of compound eye photoreceptor development
GO:0045747 P positive regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
GO:0046532 P regulation of photoreceptor cell differentiation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048749 P compound eye development
GO:0048854 P brain morphogenesis
GO:0051260 P protein homooligomerization
GO:0061630 F ubiquitin protein ligase activity
GO:1901981 F phosphatidylinositol phosphate binding
8998 O_BomoMSG1809_internal:A_BomoMSG_c8831_g1_i1
99bp
 PREDICTED:_transposable_element_Tcb1_transposase_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
8999 O_BomoMSG180_internal:A_BomoMSG_c753_g1_i1
174bp
 protein_Skeletor,_isoforms_B/C_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
9000 O_BomoMSG18100_complete:A_BomoMSG_c26042_g1_i1
403bp
 PREDICTED:_coiled-coil_domain-containing_protein_6-like_isoform_X2_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0017124 F SH3 domain binding
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