SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8941 O_BomoMSG18048_complete:A_BomoMSG_c26023_g1_i1
225bp
 NEDD4_family-interacting_protein_2_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002761 P regulation of myeloid leukocyte differentiation
GO:0002829 P negative regulation of type 2 immune response
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005938 C cell cortex
GO:0006879 P cellular iron ion homeostasis
GO:0007034 P vacuolar transport
GO:0007165 P signal transduction
GO:0010008 C endosome membrane
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0030173 C integral component of Golgi membrane
GO:0031398 P positive regulation of protein ubiquitination
GO:0032410 P negative regulation of transporter activity
GO:0032713 P negative regulation of interleukin-4 production
GO:0042130 P negative regulation of T cell proliferation
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0045619 P regulation of lymphocyte differentiation
GO:0045732 P positive regulation of protein catabolic process
GO:0048294 P negative regulation of isotype switching to IgE isotypes
GO:0048302 P regulation of isotype switching to IgG isotypes
GO:0048471 C perinuclear region of cytoplasm
GO:0050728 P negative regulation of inflammatory response
GO:0051224 P negative regulation of protein transport
8942 O_BomoMSG18049_internal:A_BomoMSG_c26024_g1_i1
642bp
 cullin-associated_NEDD8-dissociated_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0010265 P SCF complex assembly
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
8943 O_BomoMSG1804_5prime_partial:A_BomoMSG_c8814_g1_i1
106bp
 PREDICTED:_ribosomal_protein_S6_kinase-like_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030529 C ribonucleoprotein complex
GO:0043231 C intracellular membrane-bounded organelle
8944 O_BomoMSG18050_internal:A_BomoMSG_c26024_g1_i2
114bp
 cullin-associated_NEDD8-dissociated_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0010265 P SCF complex assembly
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
8945 O_BomoMSG18051_internal:A_BomoMSG_c26024_g1_i3
207bp
 cullin-associated_NEDD8-dissociated_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0010265 P SCF complex assembly
GO:0016567 P protein ubiquitination
GO:0031647 P regulation of protein stability
GO:2000435 P negative regulation of protein neddylation
8946 O_BomoMSG18052_internal:A_BomoMSG_c26024_g1_i4
343bp
 cullin-associated_NEDD8-dissociated_protein_1_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0010265 P SCF complex assembly
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0017025 F TBP-class protein binding
GO:0030154 P cell differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0043086 P negative regulation of catalytic activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045899 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0070062 C extracellular exosome
8947 O_BomoMSG18053_3prime_partial:A_BomoMSG_c26025_g1_i1
686bp
 myotubularin-related_protein_8_isoform_X1_[Bombyx_mori]
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0010506 P regulation of autophagy
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
8948 O_BomoMSG18054_complete:A_BomoMSG_c26025_g1_i1
104bp
8949 O_BomoMSG18055_3prime_partial:A_BomoMSG_c26025_g1_i2
686bp
 myotubularin-related_protein_8_isoform_X1_[Bombyx_mori]
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0010506 P regulation of autophagy
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
8950 O_BomoMSG18056_complete:A_BomoMSG_c26025_g1_i2
104bp
8951 O_BomoMSG18057_complete:A_BomoMSG_c26026_g1_i2
530bp
 stress-activated_map_kinase-interacting_protein_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005829 C cytosol
GO:0006915 P apoptotic process
GO:0031932 C TORC2 complex
8952 O_BomoMSG18058_3prime_partial:A_BomoMSG_c26027_g1_i1
395bp
 uncharacterized_protein_LOC101737719_[Bombyx_mori]
8953 O_BomoMSG18059_internal:A_BomoMSG_c26027_g1_i2
214bp
 uncharacterized_protein_LOC101737719_[Bombyx_mori]
8954 O_BomoMSG1805_3prime_partial:A_BomoMSG_c8815_g1_i1
277bp
 GPN-loop_GTPase_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
8955 O_BomoMSG18060_complete:A_BomoMSG_c26028_g1_i1
426bp
 protein_disulfide-isomerase_TMX3_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016853 F isomerase activity
GO:0045454 P cell redox homeostasis
8956 O_BomoMSG18061_complete:A_BomoMSG_c26028_g1_i3
426bp
 protein_disulfide-isomerase_TMX3_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016853 F isomerase activity
GO:0045454 P cell redox homeostasis
8957 O_BomoMSG18062_5prime_partial:A_BomoMSG_c26028_g1_i4
351bp
 protein_disulfide-isomerase_TMX3_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016853 F isomerase activity
GO:0045454 P cell redox homeostasis
8958 O_BomoMSG18063_complete:A_BomoMSG_c26028_g1_i5
426bp
 protein_disulfide-isomerase_TMX3_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016853 F isomerase activity
GO:0045454 P cell redox homeostasis
8959 O_BomoMSG18064_5prime_partial:A_BomoMSG_c26029_g1_i2
203bp
 uncharacterized_protein_LOC101736599_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8960 O_BomoMSG18065_3prime_partial:A_BomoMSG_c26029_g1_i2
154bp
8961 O_BomoMSG18066_complete:A_BomoMSG_c26030_g1_i1
315bp
 PREDICTED:_uncharacterized_protein_LOC106713896,_partial_[Papilio_machaon]
8962 O_BomoMSG18067_5prime_partial:A_BomoMSG_c26030_g1_i1
123bp
8963 O_BomoMSG18068_5prime_partial:A_BomoMSG_c26031_g1_i1
545bp
 protein_msta_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0010629 P negative regulation of gene expression
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0042826 F histone deacetylase binding
8964 O_BomoMSG18069_complete:A_BomoMSG_c26031_g1_i1
113bp
8965 O_BomoMSG1806_internal:A_BomoMSG_c8816_g1_i1
99bp
8966 O_BomoMSG18070_5prime_partial:A_BomoMSG_c26031_g1_i2
468bp
 protein_msta_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0010629 P negative regulation of gene expression
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0042826 F histone deacetylase binding
8967 O_BomoMSG18071_complete:A_BomoMSG_c26031_g1_i2
113bp
8968 O_BomoMSG18072_5prime_partial:A_BomoMSG_c26032_g1_i2
413bp
 annexin_B13_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005575 C cellular_component
GO:0007155 P cell adhesion
GO:0008360 P regulation of cell shape
8969 O_BomoMSG18073_5prime_partial:A_BomoMSG_c26032_g1_i2
105bp
8970 O_BomoMSG18074_internal:A_BomoMSG_c26033_g1_i1
476bp
 DNA_polymerase_alpha_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000785 C chromatin
GO:0001882 F nucleoside binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005658 C alpha DNA polymerase:primase complex
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0008283 P cell population proliferation
GO:0008408 F 3'-5' exonuclease activity
GO:0016363 C nuclear matrix
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
previous next from show/29137

- SilkBase 1999-2023 -