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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8851 O_BomoMSG17968_3prime_partial:A_BomoMSG_c25998_g1_i2
740bp
 ribonuclease_Z,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0072684 P mitochondrial tRNA 3'-trailer cleavage, endonucleolytic
8852 O_BomoMSG17969_5prime_partial:A_BomoMSG_c25999_g1_i1
667bp
 carnitine_O-acetyltransferase_[Bombyx_mori]
GO:0004092 F carnitine O-acetyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005777 C peroxisome
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
8853 O_BomoMSG1796_internal:A_BomoMSG_c8747_g1_i1
153bp
 uncharacterized_protein_LOC101737699_isoform_X1_[Bombyx_mori]
8854 O_BomoMSG17970_5prime_partial:A_BomoMSG_c26000_g1_i2
117bp
 differentially_expressed_in_FDCP_8_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0008150 P biological_process
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
8855 O_BomoMSG17971_5prime_partial:A_BomoMSG_c26000_g1_i3
268bp
 differentially_expressed_in_FDCP_8_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0008150 P biological_process
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
8856 O_BomoMSG17972_complete:A_BomoMSG_c26001_g2_i1
138bp
 Protein_CBR-EOR-2_[Caenorhabditis_briggsae]
8857 O_BomoMSG17973_complete:A_BomoMSG_c26001_g2_i1
126bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like,_partial_[Populus_euphratica]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
8858 O_BomoMSG17974_internal:A_BomoMSG_c26001_g6_i1
112bp
8859 O_BomoMSG17975_3prime_partial:A_BomoMSG_c26002_g1_i1
456bp
 pre-mRNA_3'_end_processing_protein_WDR33_isoform_X1_[Bombyx_mori]
GO:0005581 C collagen trimer
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0044822 F RNA binding
8860 O_BomoMSG17976_3prime_partial:A_BomoMSG_c26002_g2_i1
216bp
 protein_smoothened_isoform_X3_[Bombyx_mori]
GO:0001746 P Bolwig's organ morphogenesis
GO:0002385 P mucosal immune response
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005113 F patched binding
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007455 P eye-antennal disc morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017147 F Wnt-protein binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030707 P ovarian follicle cell development
GO:0035019 P somatic stem cell population maintenance
GO:0035567 P non-canonical Wnt signaling pathway
GO:0042813 F Wnt-activated receptor activity
GO:0042981 P regulation of apoptotic process
GO:0043025 C neuronal cell body
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048099 P anterior/posterior lineage restriction, imaginal disc
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048592 P eye morphogenesis
GO:0060070 P canonical Wnt signaling pathway
GO:0090004 P positive regulation of protein localization to plasma membrane
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
8861 O_BomoMSG17977_3prime_partial:A_BomoMSG_c26003_g1_i1
629bp
 mediator_of_RNA_polymerase_II_transcription_subunit_17_isoform_X1_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0009987 P cellular process
GO:0016592 C mediator complex
GO:0019233 P sensory perception of pain
GO:0031618 C pericentric heterochromatin
GO:0033613 F DNA-binding transcription factor binding
GO:0045498 P sex comb development
GO:0045944 P positive regulation of transcription by RNA polymerase II
8862 O_BomoMSG17978_complete:A_BomoMSG_c26003_g1_i1
138bp
8863 O_BomoMSG17979_3prime_partial:A_BomoMSG_c26004_g2_i1
125bp
 protein_piccolo_[Bombyx_mori]
8864 O_BomoMSG1797_complete:A_BomoMSG_c8771_g1_i1
398bp
 GTP_binding_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0043022 F ribosome binding
GO:0043023 F ribosomal large subunit binding
GO:0046872 F metal ion binding
8865 O_BomoMSG17980_internal:A_BomoMSG_c26004_g2_i2
128bp
 protein_piccolo_[Bombyx_mori]
8866 O_BomoMSG17981_internal:A_BomoMSG_c26004_g4_i1
671bp
 protein_piccolo_[Bombyx_mori]
8867 O_BomoMSG17982_complete:A_BomoMSG_c26004_g4_i1
138bp
8868 O_BomoMSG17983_complete:A_BomoMSG_c26004_g4_i1
111bp
8869 O_BomoMSG17984_3prime_partial:A_BomoMSG_c26005_g1_i2
483bp
 E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Bombyx_mori]
8870 O_BomoMSG17985_3prime_partial:A_BomoMSG_c26005_g1_i3
483bp
 E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Bombyx_mori]
8871 O_BomoMSG17986_complete:A_BomoMSG_c26006_g1_i1
269bp
 cyclin-C_[Bombyx_mori]
GO:0000307 C cyclin-dependent protein kinase holoenzyme complex
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
8872 O_BomoMSG17987_3prime_partial:A_BomoMSG_c26007_g1_i1
648bp
 poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006342 P heterochromatin assembly
GO:0006909 P phagocytosis
GO:0009408 P response to heat
GO:0016787 F hydrolase activity
GO:0030576 P Cajal body organization
GO:0035065 P regulation of histone acetylation
GO:0036099 P female germ-line stem cell population maintenance
GO:0043484 P regulation of RNA splicing
GO:0051457 P maintenance of protein location in nucleus
8873 O_BomoMSG17988_3prime_partial:A_BomoMSG_c26007_g1_i2
155bp
 poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006342 P heterochromatin assembly
GO:0006909 P phagocytosis
GO:0009408 P response to heat
GO:0016787 F hydrolase activity
GO:0030576 P Cajal body organization
GO:0035065 P regulation of histone acetylation
GO:0036099 P female germ-line stem cell population maintenance
GO:0043484 P regulation of RNA splicing
GO:0051457 P maintenance of protein location in nucleus
8874 O_BomoMSG17989_internal:A_BomoMSG_c26007_g1_i3
110bp
 poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
8875 O_BomoMSG1798_complete:A_BomoMSG_c8771_g1_i1
123bp
 conserved_hypothetical_protein_[uncultured_Dysgonomonas_sp.]
8876 O_BomoMSG17990_3prime_partial:A_BomoMSG_c26007_g1_i4
320bp
 poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006342 P heterochromatin assembly
GO:0006909 P phagocytosis
GO:0009408 P response to heat
GO:0016787 F hydrolase activity
GO:0030576 P Cajal body organization
GO:0035065 P regulation of histone acetylation
GO:0036099 P female germ-line stem cell population maintenance
GO:0043484 P regulation of RNA splicing
GO:0051457 P maintenance of protein location in nucleus
8877 O_BomoMSG17991_internal:A_BomoMSG_c26007_g1_i5
159bp
 poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
8878 O_BomoMSG17992_complete:A_BomoMSG_c26008_g1_i2
124bp
 uncharacterized_protein_C45G9.7_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0007266 P Rho protein signal transduction
GO:0030111 P regulation of Wnt signaling pathway
8879 O_BomoMSG17993_3prime_partial:A_BomoMSG_c26009_g1_i1
746bp
 uncharacterized_protein_LOC101738424_[Bombyx_mori]
8880 O_BomoMSG17994_internal:A_BomoMSG_c26009_g1_i2
132bp
 uncharacterized_protein_LOC101738424_[Bombyx_mori]
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