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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8821 O_BomoMSG17940_5prime_partial:A_BomoMSG_c25989_g1_i3
147bp
8822 O_BomoMSG17941_complete:A_BomoMSG_c25991_g1_i1
422bp
 uncharacterized_protein_LOC101735576_[Bombyx_mori]
8823 O_BomoMSG17942_complete:A_BomoMSG_c25991_g1_i1
122bp
8824 O_BomoMSG17943_internal:A_BomoMSG_c25992_g1_i1
172bp
 cap-specific_mRNA_(nucleoside-2'-O-)-methyltransferase_2_isoform_X2_[Bombyx_mori]
8825 O_BomoMSG17944_3prime_partial:A_BomoMSG_c25992_g1_i2
420bp
 cap-specific_mRNA_(nucleoside-2'-O-)-methyltransferase_2_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0007424 P open tracheal system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0008168 F methyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0032259 P methylation
8826 O_BomoMSG17945_internal:A_BomoMSG_c25993_g1_i1
529bp
 uncharacterized_protein_LOC101736423_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0016310 P phosphorylation
GO:0016787 F hydrolase activity
GO:0046404 F polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8827 O_BomoMSG17946_internal:A_BomoMSG_c25993_g1_i2
910bp
 uncharacterized_protein_LOC101736423_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8828 O_BomoMSG17947_complete:A_BomoMSG_c25994_g1_i3
316bp
 uncharacterized_protein_LOC101744019_isoform_X1_[Bombyx_mori]
8829 O_BomoMSG17948_complete:A_BomoMSG_c25994_g1_i3
138bp
8830 O_BomoMSG17949_complete:A_BomoMSG_c25994_g1_i3
100bp
8831 O_BomoMSG1794_5prime_partial:A_BomoMSG_c8735_g1_i1
135bp
8832 O_BomoMSG17950_5prime_partial:A_BomoMSG_c25995_g1_i2
348bp
 RUS1_family_protein_C16orf58_homolog_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8833 O_BomoMSG17951_complete:A_BomoMSG_c25995_g2_i1
180bp
 RUS1_family_protein_C16orf58_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8834 O_BomoMSG17952_complete:A_BomoMSG_c25995_g2_i2
230bp
 RUS1_family_protein_C16orf58_homolog_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8835 O_BomoMSG17953_internal:A_BomoMSG_c25996_g1_i1
364bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_isoform_X1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
8836 O_BomoMSG17954_5prime_partial:A_BomoMSG_c25996_g1_i1
143bp
 hypothetical_protein_T05_629_[Trichinella_murrelli]
8837 O_BomoMSG17955_complete:A_BomoMSG_c25996_g1_i1
102bp
 Uncharacterised_protein_[Bordetella_pertussis]
8838 O_BomoMSG17956_3prime_partial:A_BomoMSG_c25996_g1_i2
617bp
 PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
8839 O_BomoMSG17957_5prime_partial:A_BomoMSG_c25996_g1_i2
143bp
 hypothetical_protein_T05_629_[Trichinella_murrelli]
8840 O_BomoMSG17958_complete:A_BomoMSG_c25996_g1_i2
102bp
 Uncharacterised_protein_[Bordetella_pertussis]
8841 O_BomoMSG17959_internal:A_BomoMSG_c25996_g1_i3
381bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_isoform_X1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
8842 O_BomoMSG1795_3prime_partial:A_BomoMSG_c8740_g1_i1
116bp
 sodium/potassium-transporting_ATPase_subunit_alpha_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001894 P tissue homeostasis
GO:0005391 F P-type sodium:potassium-exchanging transporter activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005890 C sodium:potassium-exchanging ATPase complex
GO:0005918 C septate junction
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006883 P cellular sodium ion homeostasis
GO:0007268 P chemical synaptic transmission
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0007630 P jump response
GO:0008152 P metabolic process
GO:0008324 F cation transmembrane transporter activity
GO:0008340 P determination of adult lifespan
GO:0008344 P adult locomotory behavior
GO:0008360 P regulation of cell shape
GO:0009266 P response to temperature stimulus
GO:0009612 P response to mechanical stimulus
GO:0010107 P potassium ion import across plasma membrane
GO:0010248 P establishment or maintenance of transmembrane electrochemical gradient
GO:0015991 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0019991 P septate junction assembly
GO:0030007 P cellular potassium ion homeostasis
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035158 P regulation of tube diameter, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0036376 P sodium ion export across plasma membrane
GO:0046872 F metal ion binding
GO:0050905 P neuromuscular process
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0060439 P trachea morphogenesis
8843 O_BomoMSG17960_5prime_partial:A_BomoMSG_c25996_g1_i3
143bp
 hypothetical_protein_T05_629_[Trichinella_murrelli]
8844 O_BomoMSG17961_complete:A_BomoMSG_c25996_g1_i3
102bp
 Uncharacterised_protein_[Bordetella_pertussis]
8845 O_BomoMSG17962_internal:A_BomoMSG_c25996_g1_i4
134bp
 helicase,_partial_[Oryctes_borbonicus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
8846 O_BomoMSG17963_internal:A_BomoMSG_c25996_g1_i4
134bp
 hypothetical_protein_T05_629_[Trichinella_murrelli]
8847 O_BomoMSG17964_complete:A_BomoMSG_c25996_g1_i4
102bp
 Uncharacterised_protein_[Bordetella_pertussis]
8848 O_BomoMSG17965_complete:A_BomoMSG_c25997_g1_i1
298bp
 JNK1/MAPK8-associated_membrane_protein_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031625 F ubiquitin protein ligase binding
8849 O_BomoMSG17966_complete:A_BomoMSG_c25997_g1_i2
298bp
 JNK1/MAPK8-associated_membrane_protein_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031625 F ubiquitin protein ligase binding
8850 O_BomoMSG17967_3prime_partial:A_BomoMSG_c25998_g1_i1
745bp
 ribonuclease_Z,_mitochondrial_isoform_X6_[Bombyx_mori]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0072684 P mitochondrial tRNA 3'-trailer cleavage, endonucleolytic
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