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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8881 O_BomoMSG17995_internal:A_BomoMSG_c26009_g1_i3
108bp
 uncharacterized_protein_LOC101738424_[Bombyx_mori]
8882 O_BomoMSG17996_5prime_partial:A_BomoMSG_c26010_g1_i1
360bp
 nucleoporin_GLE1_isoform_X1_[Bombyx_mori]
GO:0000822 F inositol hexakisphosphate binding
GO:0003674 F molecular_function
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006406 P mRNA export from nucleus
GO:0006446 P regulation of translational initiation
GO:0006449 P regulation of translational termination
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0031369 F translation initiation factor binding
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0051028 P mRNA transport
8883 O_BomoMSG17997_5prime_partial:A_BomoMSG_c26010_g1_i2
477bp
 nucleoporin_GLE1_isoform_X1_[Bombyx_mori]
GO:0000822 F inositol hexakisphosphate binding
GO:0003674 F molecular_function
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006406 P mRNA export from nucleus
GO:0006446 P regulation of translational initiation
GO:0006449 P regulation of translational termination
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0031369 F translation initiation factor binding
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0051028 P mRNA transport
8884 O_BomoMSG17998_complete:A_BomoMSG_c26010_g1_i2
131bp
8885 O_BomoMSG17999_3prime_partial:A_BomoMSG_c26010_g2_i1
188bp
 nucleoporin_GLE1_isoform_X1_[Bombyx_mori]
8886 O_BomoMSG1799_complete:A_BomoMSG_c8771_g1_i1
106bp
8887 O_BomoMSG179_internal:A_BomoMSG_c747_g1_i1
166bp
 uncharacterized_protein_LOC101741653_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0005615 C extracellular space
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0051603 P proteolysis involved in cellular protein catabolic process
8888 O_BomoMSG17_5prime_partial:A_BomoMSG_c111_g1_i1
135bp
 uncharacterized_protein_LOC101739782_[Bombyx_mori]
8889 O_BomoMSG18000_5prime_partial:A_BomoMSG_c26010_g1_i3
336bp
 nucleoporin_GLE1_isoform_X1_[Bombyx_mori]
GO:0000822 F inositol hexakisphosphate binding
GO:0003674 F molecular_function
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006406 P mRNA export from nucleus
GO:0006446 P regulation of translational initiation
GO:0006449 P regulation of translational termination
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0031369 F translation initiation factor binding
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0051028 P mRNA transport
8890 O_BomoMSG18001_complete:A_BomoMSG_c26012_g1_i1
676bp
 sn1-specific_diacylglycerol_lipase_beta_isoform_X4_[Bombyx_mori]
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0007405 P neuroblast proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0019369 P arachidonic acid metabolic process
GO:0022008 P neurogenesis
GO:0042136 P neurotransmitter biosynthetic process
GO:0046872 F metal ion binding
GO:0047372 F acylglycerol lipase activity
8891 O_BomoMSG18002_complete:A_BomoMSG_c26012_g1_i1
106bp
8892 O_BomoMSG18003_complete:A_BomoMSG_c26012_g1_i2
676bp
 sn1-specific_diacylglycerol_lipase_beta_isoform_X4_[Bombyx_mori]
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0007405 P neuroblast proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0019369 P arachidonic acid metabolic process
GO:0022008 P neurogenesis
GO:0042136 P neurotransmitter biosynthetic process
GO:0046872 F metal ion binding
GO:0047372 F acylglycerol lipase activity
8893 O_BomoMSG18004_complete:A_BomoMSG_c26012_g1_i2
106bp
8894 O_BomoMSG18005_5prime_partial:A_BomoMSG_c26013_g2_i1
558bp
 dystrophin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007274 P neuromuscular synaptic transmission
GO:0007474 P imaginal disc-derived wing vein specification
GO:0007517 P muscle organ development
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0030010 P establishment of cell polarity
GO:0042383 C sarcolemma
GO:0045202 C synapse
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0046928 P regulation of neurotransmitter secretion
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050699 F WW domain binding
8895 O_BomoMSG18006_complete:A_BomoMSG_c26013_g2_i1
127bp
8896 O_BomoMSG18007_complete:A_BomoMSG_c26013_g2_i1
107bp
8897 O_BomoMSG18008_5prime_partial:A_BomoMSG_c26013_g2_i2
802bp
 dystrophin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007274 P neuromuscular synaptic transmission
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0030010 P establishment of cell polarity
GO:0042383 C sarcolemma
GO:0045202 C synapse
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0046928 P regulation of neurotransmitter secretion
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050699 F WW domain binding
8898 O_BomoMSG18009_complete:A_BomoMSG_c26013_g2_i2
127bp
8899 O_BomoMSG1800_internal:A_BomoMSG_c8779_g1_i1
113bp
 zinc_finger_protein_271_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003712 F transcription coregulator activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
8900 O_BomoMSG18010_5prime_partial:A_BomoMSG_c26013_g2_i2
108bp
8901 O_BomoMSG18011_complete:A_BomoMSG_c26013_g2_i2
107bp
8902 O_BomoMSG18012_5prime_partial:A_BomoMSG_c26013_g2_i3
173bp
 dystrophin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007274 P neuromuscular synaptic transmission
GO:0007474 P imaginal disc-derived wing vein specification
GO:0007517 P muscle organ development
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0030010 P establishment of cell polarity
GO:0042383 C sarcolemma
GO:0045202 C synapse
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0046928 P regulation of neurotransmitter secretion
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050699 F WW domain binding
8903 O_BomoMSG18013_internal:A_BomoMSG_c26014_g1_i1
164bp
 LOW_QUALITY_PROTEIN:_histone_deacetylase_4_[Bombyx_mori]
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0070932 P histone H3 deacetylation
8904 O_BomoMSG18014_5prime_partial:A_BomoMSG_c26014_g1_i1
105bp
8905 O_BomoMSG18015_3prime_partial:A_BomoMSG_c26014_g1_i2
225bp
 LOW_QUALITY_PROTEIN:_histone_deacetylase_4_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006954 P inflammatory response
GO:0007399 P nervous system development
GO:0008134 F transcription factor binding
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0030183 P B cell differentiation
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0042113 P B cell activation
GO:0045843 P negative regulation of striated muscle tissue development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070932 P histone H3 deacetylation
8906 O_BomoMSG18016_3prime_partial:A_BomoMSG_c26014_g1_i3
230bp
 LOW_QUALITY_PROTEIN:_histone_deacetylase_4_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006954 P inflammatory response
GO:0007399 P nervous system development
GO:0008134 F transcription factor binding
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0030183 P B cell differentiation
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0042113 P B cell activation
GO:0045843 P negative regulation of striated muscle tissue development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070932 P histone H3 deacetylation
8907 O_BomoMSG18017_internal:A_BomoMSG_c26014_g1_i5
189bp
 LOW_QUALITY_PROTEIN:_histone_deacetylase_4_[Bombyx_mori]
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0070932 P histone H3 deacetylation
8908 O_BomoMSG18018_5prime_partial:A_BomoMSG_c26014_g1_i5
129bp
8909 O_BomoMSG18019_complete:A_BomoMSG_c26015_g1_i1
236bp
 COMM_domain-containing_protein_2-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
8910 O_BomoMSG1801_5prime_partial:A_BomoMSG_c8809_g1_i1
141bp
 transmembrane_protein_41B_[Danaus_plexippus_plexippus]
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
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