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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8791 O_BomoMSG17913_5prime_partial:A_BomoMSG_c25978_g1_i6
480bp
8792 O_BomoMSG17914_complete:A_BomoMSG_c25978_g1_i7
302bp
 tyrosine-protein_phosphatase_10D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
8793 O_BomoMSG17915_complete:A_BomoMSG_c25979_g1_i1
349bp
 WD_repeat_domain_phosphoinositide-interacting_protein_3_[Bombyx_mori]
8794 O_BomoMSG17916_3prime_partial:A_BomoMSG_c25981_g1_i1
801bp
 histone_demethylase_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0043970 P histone H3-K9 acetylation
GO:0043992 F histone acetyltransferase activity (H3-K9 specific)
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070822 C Sin3-type complex
8795 O_BomoMSG17917_3prime_partial:A_BomoMSG_c25981_g1_i2
801bp
 histone_demethylase_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0043970 P histone H3-K9 acetylation
GO:0043992 F histone acetyltransferase activity (H3-K9 specific)
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070822 C Sin3-type complex
8796 O_BomoMSG17918_3prime_partial:A_BomoMSG_c25983_g1_i1
101bp
8797 O_BomoMSG17919_3prime_partial:A_BomoMSG_c25983_g1_i3
101bp
8798 O_BomoMSG1791_internal:A_BomoMSG_c8695_g1_i1
115bp
 ATP-binding_cassette_sub-family_G_member_8_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0007584 P response to nutrient
GO:0007588 P excretion
GO:0008152 P metabolic process
GO:0010949 P negative regulation of intestinal phytosterol absorption
GO:0015248 F sterol transporter activity
GO:0015914 P phospholipid transport
GO:0015918 P sterol transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0030299 P intestinal cholesterol absorption
GO:0033344 P cholesterol efflux
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0043190 C ATP-binding cassette (ABC) transporter complex
GO:0043235 C receptor complex
GO:0045796 P negative regulation of intestinal cholesterol absorption
GO:0046982 F protein heterodimerization activity
GO:0055085 P transmembrane transport
GO:0055092 P sterol homeostasis
8799 O_BomoMSG17920_3prime_partial:A_BomoMSG_c25984_g3_i1
303bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
8800 O_BomoMSG17921_complete:A_BomoMSG_c25984_g3_i1
121bp
8801 O_BomoMSG17922_3prime_partial:A_BomoMSG_c25984_g4_i2
296bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8802 O_BomoMSG17923_3prime_partial:A_BomoMSG_c25984_g4_i3
296bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8803 O_BomoMSG17924_5prime_partial:A_BomoMSG_c25984_g4_i4
104bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
8804 O_BomoMSG17925_complete:A_BomoMSG_c25985_g1_i1
123bp
 RPII140-upstream_gene_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8805 O_BomoMSG17926_5prime_partial:A_BomoMSG_c25985_g1_i2
270bp
 RPII140-upstream_gene_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8806 O_BomoMSG17927_3prime_partial:A_BomoMSG_c25986_g1_i1
259bp
 defective_in_cullin_neddylation_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0009314 P response to radiation
GO:0010225 P response to UV-C
GO:0010332 P response to gamma radiation
GO:0016020 C membrane
GO:0030308 P negative regulation of cell growth
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032182 F ubiquitin-like protein binding
GO:0043065 P positive regulation of apoptotic process
GO:0045116 P protein neddylation
GO:0048471 C perinuclear region of cytoplasm
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0097602 F cullin family protein binding
8807 O_BomoMSG17928_3prime_partial:A_BomoMSG_c25986_g1_i2
315bp
 defective_in_cullin_neddylation_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0009314 P response to radiation
GO:0010225 P response to UV-C
GO:0010332 P response to gamma radiation
GO:0016020 C membrane
GO:0030308 P negative regulation of cell growth
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032182 F ubiquitin-like protein binding
GO:0043065 P positive regulation of apoptotic process
GO:0045116 P protein neddylation
GO:0048471 C perinuclear region of cytoplasm
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0097602 F cullin family protein binding
8808 O_BomoMSG17929_3prime_partial:A_BomoMSG_c25986_g1_i3
315bp
 defective_in_cullin_neddylation_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0009314 P response to radiation
GO:0010225 P response to UV-C
GO:0010332 P response to gamma radiation
GO:0016020 C membrane
GO:0030308 P negative regulation of cell growth
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032182 F ubiquitin-like protein binding
GO:0043065 P positive regulation of apoptotic process
GO:0045116 P protein neddylation
GO:0048471 C perinuclear region of cytoplasm
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0097602 F cullin family protein binding
8809 O_BomoMSG1792_3prime_partial:A_BomoMSG_c8700_g1_i1
100bp
 dynein_assembly_factor_5,_axonemal_[Bombyx_mori]
GO:0003341 P cilium movement
GO:0005737 C cytoplasm
GO:0007605 P sensory perception of sound
GO:0008344 P adult locomotory behavior
GO:0030030 P cell projection organization
GO:0030317 P flagellated sperm motility
GO:0031514 C motile cilium
GO:0036158 P outer dynein arm assembly
GO:0036159 P inner dynein arm assembly
GO:0045505 F dynein intermediate chain binding
GO:0060294 P cilium movement involved in cell motility
8810 O_BomoMSG17930_complete:A_BomoMSG_c25987_g1_i1
102bp
 ARL14_effector_protein-like_[Bombyx_mori]
GO:0005737 C cytoplasm
8811 O_BomoMSG17931_complete:A_BomoMSG_c25987_g1_i2
102bp
 ARL14_effector_protein-like_[Bombyx_mori]
GO:0005737 C cytoplasm
8812 O_BomoMSG17932_complete:A_BomoMSG_c25987_g1_i3
102bp
 ARL14_effector_protein-like_[Bombyx_mori]
GO:0005737 C cytoplasm
8813 O_BomoMSG17933_3prime_partial:A_BomoMSG_c25987_g3_i1
276bp
 PREDICTED:_uncharacterized_protein_LOC105389752_[Plutella_xylostella]
GO:0046872 F metal ion binding
8814 O_BomoMSG17934_complete:A_BomoMSG_c25988_g1_i1
117bp
 fadd_[Bombyx_mori]
8815 O_BomoMSG17935_complete:A_BomoMSG_c25988_g1_i1
111bp
 fadd_[Bombyx_mori]
8816 O_BomoMSG17936_internal:A_BomoMSG_c25989_g1_i1
348bp
 GPI_transamidase_component_PIG-S_isoform_X1_[Bombyx_mori]
GO:0003923 F GPI-anchor transamidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016255 P attachment of GPI anchor to protein
GO:0042765 C GPI-anchor transamidase complex
8817 O_BomoMSG17937_5prime_partial:A_BomoMSG_c25989_g1_i1
147bp
8818 O_BomoMSG17938_3prime_partial:A_BomoMSG_c25989_g1_i2
273bp
 GPI_transamidase_component_PIG-S_isoform_X1_[Bombyx_mori]
GO:0003923 F GPI-anchor transamidase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016255 P attachment of GPI anchor to protein
GO:0042765 C GPI-anchor transamidase complex
8819 O_BomoMSG17939_3prime_partial:A_BomoMSG_c25989_g1_i3
448bp
 GPI_transamidase_component_PIG-S_isoform_X1_[Bombyx_mori]
GO:0003923 F GPI-anchor transamidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016255 P attachment of GPI anchor to protein
GO:0042765 C GPI-anchor transamidase complex
8820 O_BomoMSG1793_internal:A_BomoMSG_c8735_g1_i1
463bp
 signal_recognition_particle_subunit_SRP72_[Bombyx_mori]
GO:0005047 F signal recognition particle binding
GO:0005515 F protein binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008312 F 7S RNA binding
GO:0030529 C ribonucleoprotein complex
GO:0042493 P response to xenobiotic stimulus
GO:0044822 F RNA binding
GO:0048500 C signal recognition particle
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