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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8761 O_BomoMSG17887_complete:A_BomoMSG_c25975_g1_i1
144bp
8762 O_BomoMSG17888_5prime_partial:A_BomoMSG_c25975_g1_i1
137bp
8763 O_BomoMSG17889_5prime_partial:A_BomoMSG_c25975_g1_i2
147bp
8764 O_BomoMSG1788_5prime_partial:A_BomoMSG_c8687_g1_i1
112bp
8765 O_BomoMSG17890_3prime_partial:A_BomoMSG_c25975_g1_i2
115bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0040022 P feminization of hermaphroditic germ-line
GO:0044822 F RNA binding
8766 O_BomoMSG17891_5prime_partial:A_BomoMSG_c25975_g1_i2
107bp
8767 O_BomoMSG17892_internal:A_BomoMSG_c25975_g1_i3
503bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
8768 O_BomoMSG17893_complete:A_BomoMSG_c25975_g1_i3
144bp
8769 O_BomoMSG17894_5prime_partial:A_BomoMSG_c25975_g1_i3
137bp
8770 O_BomoMSG17895_internal:A_BomoMSG_c25975_g1_i4
477bp
 pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
8771 O_BomoMSG17896_complete:A_BomoMSG_c25975_g1_i4
144bp
8772 O_BomoMSG17897_5prime_partial:A_BomoMSG_c25975_g1_i4
137bp
8773 O_BomoMSG17898_complete:A_BomoMSG_c25976_g1_i1
313bp
 venom_allergen_5_[Bombyx_mori]
GO:0005576 C extracellular region
8774 O_BomoMSG17899_complete:A_BomoMSG_c25976_g1_i1
122bp
8775 O_BomoMSG1789_internal:A_BomoMSG_c8688_g1_i1
110bp
 ribosomal_protein_L35_[Bombyx_mori]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003729 F mRNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0043021 F ribonucleoprotein complex binding
GO:0071493 P cellular response to UV-B
8776 O_BomoMSG178_5prime_partial:A_BomoMSG_c720_g1_i1
214bp
 sodium-coupled_monocarboxylate_transporter_1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
8777 O_BomoMSG17900_complete:A_BomoMSG_c25976_g1_i1
122bp
8778 O_BomoMSG17901_internal:A_BomoMSG_c25977_g1_i1
477bp
 zinc_finger_protein_391_isoform_X1_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0045998 P positive regulation of ecdysteroid biosynthetic process
GO:0046872 F metal ion binding
8779 O_BomoMSG17902_3prime_partial:A_BomoMSG_c25978_g1_i1
708bp
 tyrosine-protein_phosphatase_10D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
8780 O_BomoMSG17903_5prime_partial:A_BomoMSG_c25978_g1_i1
480bp
8781 O_BomoMSG17904_internal:A_BomoMSG_c25978_g1_i2
112bp
8782 O_BomoMSG17905_internal:A_BomoMSG_c25978_g1_i2
112bp
8783 O_BomoMSG17906_internal:A_BomoMSG_c25978_g1_i2
112bp
 tyrosine-protein_phosphatase_10D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
8784 O_BomoMSG17907_internal:A_BomoMSG_c25978_g1_i3
134bp
8785 O_BomoMSG17908_internal:A_BomoMSG_c25978_g1_i3
134bp
8786 O_BomoMSG17909_internal:A_BomoMSG_c25978_g1_i3
134bp
 tyrosine-protein_phosphatase_10D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
8787 O_BomoMSG1790_complete:A_BomoMSG_c8693_g1_i1
306bp
 peptidyl-prolyl_cis-trans_isomerase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0000974 C Prp19 complex
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006457 P protein folding
GO:0006909 P phagocytosis
GO:0016853 F isomerase activity
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
8788 O_BomoMSG17910_internal:A_BomoMSG_c25978_g1_i5
779bp
 tyrosine-protein_phosphatase_10D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
8789 O_BomoMSG17911_5prime_partial:A_BomoMSG_c25978_g1_i5
480bp
8790 O_BomoMSG17912_3prime_partial:A_BomoMSG_c25978_g1_i6
791bp
 tyrosine-protein_phosphatase_10D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
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