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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8611 O_BomoMSG17751_3prime_partial:A_BomoMSG_c25932_g1_i1
432bp
 TOX_high_mobility_group_box_family_member_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0034056 F estrogen response element binding
GO:0042803 F protein homodimerization activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051219 F phosphoprotein binding
8612 O_BomoMSG17752_3prime_partial:A_BomoMSG_c25932_g1_i2
217bp
 TOX_high_mobility_group_box_family_member_3_[Bombyx_mori]
8613 O_BomoMSG17753_internal:A_BomoMSG_c25932_g1_i3
244bp
 TOX_high_mobility_group_box_family_member_3_[Bombyx_mori]
8614 O_BomoMSG17754_3prime_partial:A_BomoMSG_c25932_g1_i4
503bp
 TOX_high_mobility_group_box_family_member_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0019722 P calcium-mediated signaling
GO:0034056 F estrogen response element binding
GO:0042803 F protein homodimerization activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
8615 O_BomoMSG17755_3prime_partial:A_BomoMSG_c25932_g1_i5
529bp
 TOX_high_mobility_group_box_family_member_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0034056 F estrogen response element binding
GO:0042803 F protein homodimerization activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051219 F phosphoprotein binding
8616 O_BomoMSG17756_3prime_partial:A_BomoMSG_c25932_g1_i6
460bp
 TOX_high_mobility_group_box_family_member_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0034056 F estrogen response element binding
GO:0042803 F protein homodimerization activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051219 F phosphoprotein binding
8617 O_BomoMSG17757_internal:A_BomoMSG_c25932_g1_i7
482bp
 TOX_high_mobility_group_box_family_member_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0034056 F estrogen response element binding
GO:0042803 F protein homodimerization activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051219 F phosphoprotein binding
8618 O_BomoMSG17758_complete:A_BomoMSG_c25933_g1_i1
373bp
 spermine_synthase_[Bombyx_mori]
GO:0005829 C cytosol
GO:0006555 P methionine metabolic process
GO:0006595 P polyamine metabolic process
GO:0006596 P polyamine biosynthetic process
GO:0006597 P spermine biosynthetic process
GO:0008215 P spermine metabolic process
GO:0016740 F transferase activity
GO:0016768 F spermine synthase activity
GO:0070062 C extracellular exosome
8619 O_BomoMSG17759_complete:A_BomoMSG_c25937_g1_i1
497bp
 uncharacterized_protein_LOC101738379_[Bombyx_mori]
8620 O_BomoMSG1775_5prime_partial:A_BomoMSG_c8642_g1_i1
208bp
 protein_bicaudal_D_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007309 P oocyte axis specification
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008298 P intracellular mRNA localization
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017137 F small GTPase binding
GO:0019233 P sensory perception of pain
GO:0030100 P regulation of endocytosis
GO:0030154 P cell differentiation
GO:0030669 C clathrin-coated endocytic vesicle membrane
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0032050 F clathrin heavy chain binding
GO:0045502 F dynein complex binding
GO:0048477 P oogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
GO:0070727 P cellular macromolecule localization
GO:2000302 P positive regulation of synaptic vesicle exocytosis
GO:2000370 P positive regulation of clathrin-dependent endocytosis
8621 O_BomoMSG17760_internal:A_BomoMSG_c25938_g1_i1
109bp
 uncharacterized_protein_LOC101744707_[Bombyx_mori]
8622 O_BomoMSG17761_internal:A_BomoMSG_c25938_g1_i2
604bp
 uncharacterized_protein_LOC101744707_[Bombyx_mori]
8623 O_BomoMSG17762_3prime_partial:A_BomoMSG_c25939_g1_i1
481bp
 Hermansky-Pudlak_syndrome_1_protein_homolog_isoform_X1_[Bombyx_mori]
8624 O_BomoMSG17763_complete:A_BomoMSG_c25939_g1_i1
150bp
8625 O_BomoMSG17764_internal:A_BomoMSG_c25940_g1_i1
493bp
 CDK5_regulatory_subunit-associated_protein_1_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0009451 P RNA modification
GO:0016740 F transferase activity
GO:0019887 F protein kinase regulator activity
GO:0035596 F methylthiotransferase activity
GO:0035600 P tRNA methylthiolation
GO:0043412 P macromolecule modification
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
8626 O_BomoMSG17765_3prime_partial:A_BomoMSG_c25940_g1_i2
595bp
 CDK5_regulatory_subunit-associated_protein_1_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006400 P tRNA modification
GO:0007420 P brain development
GO:0008283 P cell population proliferation
GO:0009451 P RNA modification
GO:0016740 F transferase activity
GO:0019887 F protein kinase regulator activity
GO:0032403 F protein-containing complex binding
GO:0035596 F methylthiotransferase activity
GO:0035600 P tRNA methylthiolation
GO:0043412 P macromolecule modification
GO:0045664 P regulation of neuron differentiation
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
8627 O_BomoMSG17766_5prime_partial:A_BomoMSG_c25941_g1_i1
234bp
 Uncharacterized_protein_OBRU01_24320,_partial_[Operophtera_brumata]
8628 O_BomoMSG17767_5prime_partial:A_BomoMSG_c25941_g1_i2
354bp
 Uncharacterized_protein_OBRU01_24320,_partial_[Operophtera_brumata]
8629 O_BomoMSG17768_complete:A_BomoMSG_c25941_g1_i2
119bp
8630 O_BomoMSG17769_5prime_partial:A_BomoMSG_c25941_g1_i3
282bp
 Uncharacterized_protein_OBRU01_24320,_partial_[Operophtera_brumata]
8631 O_BomoMSG1776_5prime_partial:A_BomoMSG_c8642_g1_i1
157bp
8632 O_BomoMSG17770_5prime_partial:A_BomoMSG_c25941_g1_i4
210bp
 Uncharacterized_protein_OBRU01_24320,_partial_[Operophtera_brumata]
8633 O_BomoMSG17771_internal:A_BomoMSG_c25941_g2_i1
212bp
 Uncharacterized_protein_OBRU01_24320,_partial_[Operophtera_brumata]
8634 O_BomoMSG17772_3prime_partial:A_BomoMSG_c25942_g2_i3
103bp
8635 O_BomoMSG17773_complete:A_BomoMSG_c25942_g3_i1
362bp
 cyclin_G_[Bombyx_mori]
GO:0000711 P meiotic DNA repair synthesis
GO:0003677 F DNA binding
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007143 P female meiotic nuclear division
GO:0007275 P multicellular organism development
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0040008 P regulation of growth
GO:0045859 P regulation of protein kinase activity
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0060429 P epithelium development
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
8636 O_BomoMSG17774_complete:A_BomoMSG_c25942_g3_i1
160bp
8637 O_BomoMSG17775_complete:A_BomoMSG_c25942_g3_i2
362bp
 cyclin_G_[Bombyx_mori]
GO:0000711 P meiotic DNA repair synthesis
GO:0003677 F DNA binding
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007143 P female meiotic nuclear division
GO:0007275 P multicellular organism development
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0040008 P regulation of growth
GO:0045859 P regulation of protein kinase activity
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0060429 P epithelium development
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
8638 O_BomoMSG17776_complete:A_BomoMSG_c25942_g3_i2
160bp
8639 O_BomoMSG17777_complete:A_BomoMSG_c25942_g6_i1
436bp
 NADPH-specific_isocitrate_dehydrogenase_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0004450 F isocitrate dehydrogenase (NADP+) activity
GO:0005739 C mitochondrion
GO:0006097 P glyoxylate cycle
GO:0006099 P tricarboxylic acid cycle
GO:0006102 P isocitrate metabolic process
GO:0006103 P 2-oxoglutarate metabolic process
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
8640 O_BomoMSG17778_5prime_partial:A_BomoMSG_c25943_g1_i3
350bp
 UDP-glucose_6-dehydrogenase_[Bombyx_mori]
GO:0002121 P inter-male aggressive behavior
GO:0003979 F UDP-glucose 6-dehydrogenase activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006065 P UDP-glucuronate biosynthetic process
GO:0007166 P cell surface receptor signaling pathway
GO:0007224 P smoothened signaling pathway
GO:0007367 P segment polarity determination
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007428 P primary branching, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007507 P heart development
GO:0007509 P mesoderm migration involved in gastrulation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0015014 P heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0016055 P Wnt signaling pathway
GO:0016319 P mushroom body development
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0042048 P olfactory behavior
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
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