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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8581 O_BomoMSG17724_internal:A_BomoMSG_c25929_g1_i1
124bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
8582 O_BomoMSG17725_5prime_partial:A_BomoMSG_c25929_g1_i1
121bp
8583 O_BomoMSG17726_3prime_partial:A_BomoMSG_c25929_g1_i1
110bp
8584 O_BomoMSG17727_internal:A_BomoMSG_c25929_g1_i3
663bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
8585 O_BomoMSG17728_5prime_partial:A_BomoMSG_c25929_g1_i3
158bp
8586 O_BomoMSG17729_complete:A_BomoMSG_c25929_g1_i3
142bp
8587 O_BomoMSG1772_3prime_partial:A_BomoMSG_c8636_g1_i1
122bp
 Chain_B,_Sp2-sp3_-_A_Complex_Of_Two_Storage_Proteins_From_Bombyx_Mori_Hemolymph
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0045735 F nutrient reservoir activity
8588 O_BomoMSG17730_complete:A_BomoMSG_c25929_g1_i3
108bp
8589 O_BomoMSG17731_internal:A_BomoMSG_c25929_g1_i4
512bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
8590 O_BomoMSG17732_5prime_partial:A_BomoMSG_c25929_g1_i4
158bp
8591 O_BomoMSG17733_complete:A_BomoMSG_c25929_g1_i4
142bp
8592 O_BomoMSG17734_complete:A_BomoMSG_c25929_g1_i4
108bp
8593 O_BomoMSG17735_internal:A_BomoMSG_c25929_g1_i5
229bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
8594 O_BomoMSG17736_5prime_partial:A_BomoMSG_c25929_g1_i5
158bp
8595 O_BomoMSG17737_complete:A_BomoMSG_c25929_g1_i5
108bp
8596 O_BomoMSG17738_internal:A_BomoMSG_c25929_g1_i6
494bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
8597 O_BomoMSG17739_5prime_partial:A_BomoMSG_c25929_g1_i6
158bp
8598 O_BomoMSG1773_5prime_partial:A_BomoMSG_c8636_g1_i1
112bp
8599 O_BomoMSG17740_complete:A_BomoMSG_c25929_g1_i6
142bp
8600 O_BomoMSG17741_complete:A_BomoMSG_c25929_g1_i6
108bp
8601 O_BomoMSG17742_internal:A_BomoMSG_c25929_g1_i7
393bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
8602 O_BomoMSG17743_5prime_partial:A_BomoMSG_c25929_g1_i7
158bp
8603 O_BomoMSG17744_complete:A_BomoMSG_c25929_g1_i7
142bp
8604 O_BomoMSG17745_complete:A_BomoMSG_c25929_g1_i7
108bp
8605 O_BomoMSG17746_internal:A_BomoMSG_c25930_g1_i1
99bp
 DNA_replication_licensing_factor_Mcm5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0003688 F DNA replication origin binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030174 P regulation of DNA-dependent DNA replication initiation
GO:0042555 C MCM complex
GO:0043009 P chordate embryonic development
GO:0043066 P negative regulation of apoptotic process
8606 O_BomoMSG17747_3prime_partial:A_BomoMSG_c25930_g1_i3
568bp
 DNA_replication_licensing_factor_Mcm5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0003688 F DNA replication origin binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030174 P regulation of DNA-dependent DNA replication initiation
GO:0042555 C MCM complex
8607 O_BomoMSG17748_complete:A_BomoMSG_c25930_g1_i3
114bp
 hypothetical_protein_X777_04430,_partial_[Ooceraea_biroi]
8608 O_BomoMSG17749_5prime_partial:A_BomoMSG_c25931_g1_i1
179bp
 myristoylated_alanine-rich_C-kinase_substrate_[Bombyx_mori]
8609 O_BomoMSG1774_internal:A_BomoMSG_c8642_g1_i1
212bp
8610 O_BomoMSG17750_complete:A_BomoMSG_c25931_g1_i2
203bp
 myristoylated_alanine-rich_C-kinase_substrate_[Bombyx_mori]
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