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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
811 O_BomoMSG10730_internal:A_BomoMSG_c22882_g1_i2
373bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
812 O_BomoMSG10731_5prime_partial:A_BomoMSG_c22883_g1_i1
491bp
 PREDICTED:_RNA-binding_protein_fusilli_isoform_X3_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008380 P RNA splicing
GO:0043484 P regulation of RNA splicing
813 O_BomoMSG10732_complete:A_BomoMSG_c22883_g1_i1
149bp
814 O_BomoMSG10733_complete:A_BomoMSG_c22883_g1_i1
107bp
815 O_BomoMSG10734_complete:A_BomoMSG_c22883_g1_i2
358bp
 RNA-binding_protein_fusilli_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008380 P RNA splicing
GO:0043484 P regulation of RNA splicing
816 O_BomoMSG10735_complete:A_BomoMSG_c22883_g1_i2
125bp
817 O_BomoMSG10736_complete:A_BomoMSG_c22883_g1_i2
107bp
818 O_BomoMSG10737_internal:A_BomoMSG_c22884_g1_i1
218bp
 zinc_finger_protein_91-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
819 O_BomoMSG10738_internal:A_BomoMSG_c22885_g1_i1
183bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_single-stranded_DNA-binding_protein_3_[Papilio_machaon]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006461 P protein-containing complex assembly
GO:0008284 P positive regulation of cell population proliferation
GO:0021501 P prechordal plate formation
GO:0021547 P midbrain-hindbrain boundary initiation
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060322 P head development
GO:0060323 P head morphogenesis
GO:2000744 P positive regulation of anterior head development
820 O_BomoMSG10739_5prime_partial:A_BomoMSG_c22885_g1_i1
134bp
821 O_BomoMSG1073_complete:A_BomoMSG_c5057_g1_i1
101bp
822 O_BomoMSG10740_3prime_partial:A_BomoMSG_c22885_g1_i2
241bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_single-stranded_DNA-binding_protein_3_[Papilio_machaon]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006461 P protein-containing complex assembly
GO:0008284 P positive regulation of cell population proliferation
GO:0021501 P prechordal plate formation
GO:0021547 P midbrain-hindbrain boundary initiation
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060322 P head development
GO:0060323 P head morphogenesis
GO:2000744 P positive regulation of anterior head development
823 O_BomoMSG10741_5prime_partial:A_BomoMSG_c22886_g1_i1
443bp
 phosphatase_and_actin_regulator_1_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008157 F protein phosphatase 1 binding
GO:0008599 F protein phosphatase regulator activity
GO:0030054 C cell junction
GO:0031032 P actomyosin structure organization
GO:0031532 P actin cytoskeleton reorganization
GO:0043086 P negative regulation of catalytic activity
GO:0043149 P stress fiber assembly
GO:0045202 C synapse
GO:0050790 P regulation of catalytic activity
824 O_BomoMSG10742_complete:A_BomoMSG_c22886_g1_i1
104bp
825 O_BomoMSG10743_complete:A_BomoMSG_c22886_g1_i1
100bp
826 O_BomoMSG10744_3prime_partial:A_BomoMSG_c22887_g1_i1
135bp
 zinc_transporter_ZIP10_[Bombyx_mori]
GO:0002903 P negative regulation of B cell apoptotic process
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006829 P zinc ion transport
GO:0006882 P cellular zinc ion homeostasis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0030890 P positive regulation of B cell proliferation
GO:0046873 F metal ion transmembrane transporter activity
GO:0050861 P positive regulation of B cell receptor signaling pathway
GO:0055085 P transmembrane transport
GO:0071578 P zinc ion import across plasma membrane
GO:1903615 P positive regulation of protein tyrosine phosphatase activity
827 O_BomoMSG10745_internal:A_BomoMSG_c22888_g1_i1
261bp
 uncharacterized_protein_K02A2.6-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
828 O_BomoMSG10746_5prime_partial:A_BomoMSG_c22890_g1_i1
149bp
 sec13-like_protein_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0006810 P transport
GO:0006999 P nuclear pore organization
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007080 P mitotic metaphase plate congression
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
GO:0051301 P cell division
GO:0051315 P attachment of mitotic spindle microtubules to kinetochore
829 O_BomoMSG10747_complete:A_BomoMSG_c22890_g1_i2
378bp
 sec13-like_protein_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0006810 P transport
GO:0006999 P nuclear pore organization
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007080 P mitotic metaphase plate congression
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
GO:0051301 P cell division
GO:0051315 P attachment of mitotic spindle microtubules to kinetochore
830 O_BomoMSG10748_internal:A_BomoMSG_c22892_g1_i1
308bp
 origin_recognition_complex_subunit_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006277 P DNA amplification
GO:0006342 P heterochromatin assembly
GO:0008283 P cell population proliferation
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0042023 P DNA endoreduplication
831 O_BomoMSG10749_5prime_partial:A_BomoMSG_c22892_g1_i1
121bp
832 O_BomoMSG1074_internal:A_BomoMSG_c5063_g1_i1
109bp
 sid-1-like_protein2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003725 F double-stranded RNA binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
833 O_BomoMSG10750_3prime_partial:A_BomoMSG_c22892_g1_i2
542bp
 origin_recognition_complex_subunit_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006277 P DNA amplification
GO:0006342 P heterochromatin assembly
GO:0008283 P cell population proliferation
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0042023 P DNA endoreduplication
834 O_BomoMSG10751_5prime_partial:A_BomoMSG_c22892_g1_i2
121bp
835 O_BomoMSG10752_3prime_partial:A_BomoMSG_c22892_g1_i3
542bp
 origin_recognition_complex_subunit_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006277 P DNA amplification
GO:0006342 P heterochromatin assembly
GO:0008283 P cell population proliferation
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0042023 P DNA endoreduplication
836 O_BomoMSG10753_5prime_partial:A_BomoMSG_c22892_g1_i3
121bp
837 O_BomoMSG10754_complete:A_BomoMSG_c22893_g1_i1
308bp
 deoxyribose-phosphate_aldolase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004139 F deoxyribose-phosphate aldolase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006098 P pentose-phosphate shunt
GO:0009264 P deoxyribonucleotide catabolic process
GO:0016052 P carbohydrate catabolic process
GO:0016829 F lyase activity
GO:0046121 P deoxyribonucleoside catabolic process
GO:0046386 P deoxyribose phosphate catabolic process
GO:0070062 C extracellular exosome
838 O_BomoMSG10755_3prime_partial:A_BomoMSG_c22894_g1_i1
850bp
 LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_54_[Bombyx_mori]
GO:0000938 C GARP complex
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006896 P Golgi to vacuole transport
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0007291 P sperm individualization
GO:0015031 P protein transport
GO:0019905 F syntaxin binding
GO:0030154 P cell differentiation
GO:0042147 P retrograde transport, endosome to Golgi
839 O_BomoMSG10756_internal:A_BomoMSG_c22894_g1_i2
320bp
 LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_54_[Bombyx_mori]
GO:0000938 C GARP complex
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006896 P Golgi to vacuole transport
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0007291 P sperm individualization
GO:0015031 P protein transport
GO:0019905 F syntaxin binding
GO:0030154 P cell differentiation
GO:0042147 P retrograde transport, endosome to Golgi
840 O_BomoMSG10757_3prime_partial:A_BomoMSG_c22896_g1_i1
156bp
 uncharacterized_protein_LOC101743204_[Bombyx_mori]
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