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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7891 O_BomoMSG17102_internal:A_BomoMSG_c25717_g1_i4
218bp
 solute_carrier_family_41_member_1_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0008324 F cation transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0098655 P cation transmembrane transport
7892 O_BomoMSG17103_5prime_partial:A_BomoMSG_c25718_g1_i3
433bp
 tRNA-dihydrouridine(16/17)_synthase_[NAD(P)(+)]-like_isoform_X1_[Bombyx_mori]
GO:0002943 P tRNA dihydrouridine synthesis
GO:0003824 F catalytic activity
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0016491 F oxidoreductase activity
GO:0017150 F tRNA dihydrouridine synthase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
7893 O_BomoMSG17104_5prime_partial:A_BomoMSG_c25718_g1_i4
277bp
 tRNA-dihydrouridine(16/17)_synthase_[NAD(P)(+)]-like_isoform_X1_[Bombyx_mori]
GO:0002943 P tRNA dihydrouridine synthesis
GO:0003824 F catalytic activity
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0016491 F oxidoreductase activity
GO:0017150 F tRNA dihydrouridine synthase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
7894 O_BomoMSG17105_5prime_partial:A_BomoMSG_c25718_g1_i5
143bp
 tRNA-dihydrouridine(20/20a)_synthase_isoform_X2_[Bombyx_mori]
GO:0002943 P tRNA dihydrouridine synthesis
GO:0003824 F catalytic activity
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0016491 F oxidoreductase activity
GO:0017150 F tRNA dihydrouridine synthase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
7895 O_BomoMSG17106_3prime_partial:A_BomoMSG_c25719_g1_i1
836bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
7896 O_BomoMSG17107_internal:A_BomoMSG_c25719_g1_i2
374bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
7897 O_BomoMSG17108_internal:A_BomoMSG_c25719_g1_i3
998bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
7898 O_BomoMSG17109_3prime_partial:A_BomoMSG_c25719_g1_i3
115bp
7899 O_BomoMSG1710_5prime_partial:A_BomoMSG_c8117_g1_i1
100bp
 DNA_repair_protein_XRCC2_[Operophtera_brumata]
7900 O_BomoMSG17110_internal:A_BomoMSG_c25720_g1_i1
470bp
 cullin-5_[Bombyx_mori]
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
7901 O_BomoMSG17111_complete:A_BomoMSG_c25721_g1_i1
249bp
 max_dimerization_protein_4-like_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008285 P negative regulation of cell population proliferation
GO:0046983 F protein dimerization activity
7902 O_BomoMSG17112_complete:A_BomoMSG_c25721_g1_i1
121bp
7903 O_BomoMSG17113_5prime_partial:A_BomoMSG_c25721_g1_i2
241bp
 max_dimerization_protein_4-like_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008285 P negative regulation of cell population proliferation
GO:0046983 F protein dimerization activity
7904 O_BomoMSG17114_complete:A_BomoMSG_c25721_g1_i2
121bp
7905 O_BomoMSG17115_5prime_partial:A_BomoMSG_c25723_g1_i1
126bp
 mitochondrial_inner_membrane_protease_ATP23_homolog_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7906 O_BomoMSG17116_5prime_partial:A_BomoMSG_c25723_g1_i3
216bp
 mitochondrial_inner_membrane_protease_ATP23_homolog_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7907 O_BomoMSG17117_complete:A_BomoMSG_c25723_g1_i4
258bp
 mitochondrial_inner_membrane_protease_ATP23_homolog_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7908 O_BomoMSG17118_3prime_partial:A_BomoMSG_c25724_g1_i1
300bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
7909 O_BomoMSG17119_internal:A_BomoMSG_c25724_g1_i2
252bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X2_[Bombyx_mori]
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
7910 O_BomoMSG1711_5prime_partial:A_BomoMSG_c8120_g1_i1
101bp
7911 O_BomoMSG17120_3prime_partial:A_BomoMSG_c25724_g1_i3
427bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
7912 O_BomoMSG17121_3prime_partial:A_BomoMSG_c25724_g1_i4
330bp
 tRNA_(adenine(37)-N6)-methyltransferase_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
7913 O_BomoMSG17122_3prime_partial:A_BomoMSG_c25725_g1_i1
293bp
 rab_GTPase-binding_effector_protein_1_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0008083 F growth factor activity
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030139 C endocytic vesicle
GO:0031410 C cytoplasmic vesicle
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0055037 C recycling endosome
7914 O_BomoMSG17123_complete:A_BomoMSG_c25725_g1_i1
136bp
7915 O_BomoMSG17124_3prime_partial:A_BomoMSG_c25725_g1_i2
255bp
 rab_GTPase-binding_effector_protein_1_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0008083 F growth factor activity
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030139 C endocytic vesicle
GO:0031410 C cytoplasmic vesicle
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0055037 C recycling endosome
7916 O_BomoMSG17125_complete:A_BomoMSG_c25725_g1_i2
136bp
7917 O_BomoMSG17126_internal:A_BomoMSG_c25727_g1_i1
598bp
 C3_and_PZP-like_alpha-2-macroglobulin_domain-containing_protein_8_isoform_X1_[Bombyx_mori]
GO:0001933 P negative regulation of protein phosphorylation
GO:0001942 P hair follicle development
GO:0004866 F endopeptidase inhibitor activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0009986 C cell surface
GO:0010466 P negative regulation of peptidase activity
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031225 C anchored component of membrane
GO:0045616 P regulation of keratinocyte differentiation
GO:0050431 F transforming growth factor beta binding
GO:0061045 P negative regulation of wound healing
GO:0072675 P osteoclast fusion
7918 O_BomoMSG17127_complete:A_BomoMSG_c25727_g1_i1
127bp
7919 O_BomoMSG17128_5prime_partial:A_BomoMSG_c25727_g1_i1
116bp
7920 O_BomoMSG17129_5prime_partial:A_BomoMSG_c25727_g1_i1
105bp
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