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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7861 O_BomoMSG17076_5prime_partial:A_BomoMSG_c25707_g3_i1
188bp
 acidic_fibroblast_growth_factor_intracellular-binding_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007368 P determination of left/right symmetry
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0017134 F fibroblast growth factor binding
GO:0060026 P convergent extension
GO:0060271 P cilium assembly
GO:0070121 P Kupffer's vesicle development
7862 O_BomoMSG17077_complete:A_BomoMSG_c25709_g3_i1
203bp
 ras-related_protein_Rab-30_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007030 P Golgi organization
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031985 C Golgi cisterna
7863 O_BomoMSG17078_3prime_partial:A_BomoMSG_c25710_g1_i1
141bp
 DNA_polymerase_epsilon_subunit_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043966 P histone H3 acetylation
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
7864 O_BomoMSG17079_complete:A_BomoMSG_c25711_g2_i1
462bp
 bleomycin_hydrolase_isoform_X2_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004177 F aminopeptidase activity
GO:0004180 F carboxypeptidase activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0042493 P response to xenobiotic stimulus
GO:0070062 C extracellular exosome
7865 O_BomoMSG1707_internal:A_BomoMSG_c8106_g1_i1
123bp
 3-hydroxy-3-methylglutaryl-CoA_reductase_precursor_[Bombyx_mori]
GO:0004420 F hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008299 P isoprenoid biosynthetic process
GO:0015936 P coenzyme A metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050661 F NADP binding
GO:0050662 F obsolete coenzyme binding
GO:0055114 P obsolete oxidation-reduction process
7866 O_BomoMSG17080_3prime_partial:A_BomoMSG_c25712_g2_i1
309bp
 F-box_only_protein_28_[Bombyx_mori]
GO:0005515 F protein binding
7867 O_BomoMSG17081_5prime_partial:A_BomoMSG_c25712_g1_i2
102bp
7868 O_BomoMSG17082_5prime_partial:A_BomoMSG_c25712_g1_i3
108bp
7869 O_BomoMSG17083_5prime_partial:A_BomoMSG_c25712_g1_i4
148bp
 F-box_only_protein_28_[Bombyx_mori]
7870 O_BomoMSG17084_complete:A_BomoMSG_c25713_g1_i1
236bp
 ubiquitin_domain-containing_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0043130 F ubiquitin binding
7871 O_BomoMSG17085_3prime_partial:A_BomoMSG_c25713_g1_i1
140bp
7872 O_BomoMSG17086_5prime_partial:A_BomoMSG_c25713_g2_i1
119bp
7873 O_BomoMSG17087_5prime_partial:A_BomoMSG_c25713_g2_i2
119bp
7874 O_BomoMSG17088_5prime_partial:A_BomoMSG_c25714_g1_i1
201bp
 H(+)/Cl(-)_exchange_transporter_3_isoform_X5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0012506 C vesicle membrane
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
7875 O_BomoMSG17089_complete:A_BomoMSG_c25714_g1_i1
139bp
7876 O_BomoMSG1708_5prime_partial:A_BomoMSG_c8109_g1_i1
143bp
 WD_repeat-containing_protein_13_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:1904691 P negative regulation of type B pancreatic cell proliferation
GO:1990841 F promoter-specific chromatin binding
7877 O_BomoMSG17090_5prime_partial:A_BomoMSG_c25714_g1_i2
502bp
 H(+)/Cl(-)_exchange_transporter_5_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0012506 C vesicle membrane
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
7878 O_BomoMSG17091_complete:A_BomoMSG_c25714_g1_i2
139bp
7879 O_BomoMSG17092_5prime_partial:A_BomoMSG_c25714_g1_i2
117bp
7880 O_BomoMSG17093_3prime_partial:A_BomoMSG_c25715_g1_i1
210bp
7881 O_BomoMSG17094_5prime_partial:A_BomoMSG_c25715_g1_i1
203bp
 THO_complex_subunit_1_[Bombyx_mori]
GO:0000018 P regulation of DNA recombination
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006369 P termination of RNA polymerase II transcription
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031124 P mRNA 3'-end processing
GO:0031297 P replication fork processing
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0045171 C intercellular bridge
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048297 P negative regulation of isotype switching to IgA isotypes
GO:0051028 P mRNA transport
GO:2000002 P negative regulation of DNA damage checkpoint
7882 O_BomoMSG17095_complete:A_BomoMSG_c25716_g1_i1
280bp
 uncharacterized_protein_LOC101742471_[Bombyx_mori]
7883 O_BomoMSG17096_3prime_partial:A_BomoMSG_c25716_g1_i1
138bp
 protease-like_protein,_partial_[Bombyx_mori]
7884 O_BomoMSG17097_3prime_partial:A_BomoMSG_c25716_g1_i2
138bp
 protease-like_protein,_partial_[Bombyx_mori]
7885 O_BomoMSG17098_5prime_partial:A_BomoMSG_c25716_g1_i2
117bp
 PREDICTED:_uncharacterized_protein_LOC105380908_[Plutella_xylostella]
7886 O_BomoMSG17099_internal:A_BomoMSG_c25717_g1_i1
361bp
 solute_carrier_family_41_member_1_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0008324 F cation transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0098655 P cation transmembrane transport
7887 O_BomoMSG1709_5prime_partial:A_BomoMSG_c8109_g1_i1
104bp
7888 O_BomoMSG170_internal:A_BomoMSG_c686_g1_i1
113bp
 zinc_finger_protein_454_[Bombyx_mori]
7889 O_BomoMSG17100_3prime_partial:A_BomoMSG_c25717_g1_i2
363bp
 solute_carrier_family_41_member_1_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0008324 F cation transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0098655 P cation transmembrane transport
7890 O_BomoMSG17101_3prime_partial:A_BomoMSG_c25717_g1_i3
354bp
 solute_carrier_family_41_member_1_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0008324 F cation transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0098655 P cation transmembrane transport
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