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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7531 O_BomoMSG1677_internal:A_BomoMSG_c7974_g1_i1
184bp
7532 O_BomoMSG16780_internal:A_BomoMSG_c25615_g1_i6
385bp
 neurexin-4_isoform_X1_[Bombyx_mori]
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
7533 O_BomoMSG16781_5prime_partial:A_BomoMSG_c25617_g1_i1
205bp
 vacuolar_protein_sorting-associated_protein_33B-like,_partial_[Bombyx_mori]
7534 O_BomoMSG16782_complete:A_BomoMSG_c25618_g1_i1
341bp
 speckle-type_POZ_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016567 P protein ubiquitination
GO:0031397 P negative regulation of protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
7535 O_BomoMSG16783_complete:A_BomoMSG_c25618_g1_i2
341bp
 speckle-type_POZ_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016567 P protein ubiquitination
GO:0031397 P negative regulation of protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
7536 O_BomoMSG16784_5prime_partial:A_BomoMSG_c25620_g1_i1
309bp
 general_transcription_factor_IIH_subunit_4_isoform_X3_[Bombyx_mori]
7537 O_BomoMSG16785_5prime_partial:A_BomoMSG_c25620_g1_i1
287bp
 general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
7538 O_BomoMSG16786_5prime_partial:A_BomoMSG_c25620_g1_i2
335bp
 general_transcription_factor_IIH_subunit_4_isoform_X3_[Bombyx_mori]
7539 O_BomoMSG16787_5prime_partial:A_BomoMSG_c25620_g1_i2
313bp
 general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
7540 O_BomoMSG16788_complete:A_BomoMSG_c25620_g1_i3
476bp
 general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
7541 O_BomoMSG16789_complete:A_BomoMSG_c25620_g1_i3
107bp
7542 O_BomoMSG1678_5prime_partial:A_BomoMSG_c7974_g1_i1
130bp
7543 O_BomoMSG16790_3prime_partial:A_BomoMSG_c25620_g1_i4
268bp
 general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
7544 O_BomoMSG16791_complete:A_BomoMSG_c25620_g1_i4
107bp
7545 O_BomoMSG16792_complete:A_BomoMSG_c25621_g1_i1
469bp
 uncharacterized_protein_LOC101737369_[Bombyx_mori]
GO:0002118 P aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0007517 P muscle organ development
GO:0007530 P sex determination
GO:0007617 P mating behavior
GO:0007618 P mating
GO:0007620 P copulation
GO:0008049 P male courtship behavior
GO:0016199 P axon midline choice point recognition
GO:0016543 P male courtship behavior, orientation prior to leg tapping and wing vibration
GO:0016544 P male courtship behavior, tapping to detect pheromone
GO:0016545 P male courtship behavior, veined wing vibration
GO:0021954 P central nervous system neuron development
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0046661 P male sex differentiation
GO:0046872 F metal ion binding
GO:0048047 P mating behavior, sex discrimination
GO:0048065 P male courtship behavior, veined wing extension
GO:0048813 P dendrite morphogenesis
GO:0060179 P male mating behavior
7546 O_BomoMSG16793_5prime_partial:A_BomoMSG_c25621_g1_i2
356bp
 PREDICTED:_protein_bric-a-brac_2-like_isoform_X3_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007455 P eye-antennal disc morphogenesis
GO:0007478 P leg disc morphogenesis
GO:0019233 P sensory perception of pain
GO:0061040 P female gonad morphogenesis
7547 O_BomoMSG16794_5prime_partial:A_BomoMSG_c25621_g1_i3
546bp
 uncharacterized_protein_LOC101737369_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007455 P eye-antennal disc morphogenesis
GO:0007478 P leg disc morphogenesis
GO:0007548 P sex differentiation
GO:0046660 P female sex differentiation
GO:0048070 P regulation of developmental pigmentation
GO:0048071 P sex-specific pigmentation
GO:0048086 P negative regulation of developmental pigmentation
GO:0048092 P negative regulation of male pigmentation
7548 O_BomoMSG16795_5prime_partial:A_BomoMSG_c25621_g1_i4
116bp
 uncharacterized_protein_LOC101737369_[Bombyx_mori]
7549 O_BomoMSG16796_3prime_partial:A_BomoMSG_c25622_g1_i1
553bp
 actin-binding_protein_IPP_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
7550 O_BomoMSG16797_5prime_partial:A_BomoMSG_c25622_g1_i1
173bp
7551 O_BomoMSG16798_3prime_partial:A_BomoMSG_c25622_g1_i2
553bp
 actin-binding_protein_IPP_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
7552 O_BomoMSG16799_5prime_partial:A_BomoMSG_c25622_g1_i2
173bp
7553 O_BomoMSG1679_5prime_partial:A_BomoMSG_c7974_g1_i1
112bp
7554 O_BomoMSG167_5prime_partial:A_BomoMSG_c664_g1_i1
133bp
7555 O_BomoMSG16800_internal:A_BomoMSG_c25622_g1_i3
214bp
 actin-binding_protein_IPP_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
7556 O_BomoMSG16801_5prime_partial:A_BomoMSG_c25622_g1_i3
173bp
7557 O_BomoMSG16802_internal:A_BomoMSG_c25622_g1_i4
239bp
 actin-binding_protein_IPP_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
7558 O_BomoMSG16803_5prime_partial:A_BomoMSG_c25622_g1_i4
173bp
7559 O_BomoMSG16804_complete:A_BomoMSG_c25623_g2_i1
318bp
 arginine/serine-rich_protein_PNISR_isoform_X1_[Bombyx_mori]
7560 O_BomoMSG16805_complete:A_BomoMSG_c25623_g2_i1
152bp
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