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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7501 O_BomoMSG16752_complete:A_BomoMSG_c25609_g1_i2
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
7502 O_BomoMSG16753_complete:A_BomoMSG_c25609_g1_i2
105bp
7503 O_BomoMSG16754_complete:A_BomoMSG_c25609_g1_i2
103bp
7504 O_BomoMSG16755_complete:A_BomoMSG_c25609_g1_i3
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
7505 O_BomoMSG16756_complete:A_BomoMSG_c25609_g1_i3
105bp
7506 O_BomoMSG16757_complete:A_BomoMSG_c25609_g1_i3
103bp
7507 O_BomoMSG16758_complete:A_BomoMSG_c25609_g1_i4
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
7508 O_BomoMSG16759_complete:A_BomoMSG_c25609_g1_i4
105bp
7509 O_BomoMSG1675_5prime_partial:A_BomoMSG_c7972_g1_i1
133bp
 uncharacterized_protein_LOC110374396_[Helicoverpa_armigera]
7510 O_BomoMSG16760_complete:A_BomoMSG_c25609_g1_i4
103bp
7511 O_BomoMSG16761_complete:A_BomoMSG_c25609_g1_i5
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
7512 O_BomoMSG16762_complete:A_BomoMSG_c25609_g1_i5
105bp
7513 O_BomoMSG16763_complete:A_BomoMSG_c25609_g1_i5
103bp
7514 O_BomoMSG16764_complete:A_BomoMSG_c25609_g1_i6
351bp
 RNA-binding_protein_39_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
7515 O_BomoMSG16765_complete:A_BomoMSG_c25609_g1_i6
105bp
7516 O_BomoMSG16766_complete:A_BomoMSG_c25609_g1_i6
103bp
7517 O_BomoMSG16767_internal:A_BomoMSG_c25611_g1_i1
733bp
 nodal_modulator_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005789 C endoplasmic reticulum membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
7518 O_BomoMSG16768_complete:A_BomoMSG_c25611_g1_i1
129bp
7519 O_BomoMSG16769_3prime_partial:A_BomoMSG_c25612_g1_i1
460bp
 tetratricopeptide_repeat_protein_21B_[Bombyx_mori]
GO:0000790 C chromatin
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072372 C cilium
GO:0097542 C ciliary tip
7520 O_BomoMSG1676_internal:A_BomoMSG_c7974_g1_i1
184bp
 eukaryotic_translation_initiation_factor_4_gamma_2_[Bombyx_mori]
7521 O_BomoMSG16770_complete:A_BomoMSG_c25612_g1_i1
111bp
 PREDICTED:_protein_NATD1_[Amyelois_transitella]
7522 O_BomoMSG16771_complete:A_BomoMSG_c25613_g1_i2
304bp
 vacuolar_protein_sorting-associated_protein_37A_[Bombyx_mori]
GO:0000813 C ESCRT I complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005813 C centrosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031902 C late endosome membrane
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043231 C intracellular membrane-bounded organelle
7523 O_BomoMSG16772_5prime_partial:A_BomoMSG_c25614_g1_i1
516bp
 esterase_B1-like_[Helicoverpa_armigera]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
7524 O_BomoMSG16773_5prime_partial:A_BomoMSG_c25614_g1_i2
482bp
 esterase_B1-like_[Helicoverpa_armigera]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
7525 O_BomoMSG16774_complete:A_BomoMSG_c25614_g1_i3
443bp
 esterase_B1-like_[Helicoverpa_armigera]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
7526 O_BomoMSG16775_complete:A_BomoMSG_c25614_g1_i4
504bp
 esterase_B1-like_[Helicoverpa_armigera]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
7527 O_BomoMSG16776_internal:A_BomoMSG_c25615_g1_i2
372bp
 neurexin-4_isoform_X1_[Bombyx_mori]
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
7528 O_BomoMSG16777_3prime_partial:A_BomoMSG_c25615_g1_i3
546bp
 neurexin-4_isoform_X1_[Bombyx_mori]
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
7529 O_BomoMSG16778_internal:A_BomoMSG_c25615_g1_i4
222bp
 neurexin-4_isoform_X3_[Bombyx_mori]
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
7530 O_BomoMSG16779_3prime_partial:A_BomoMSG_c25615_g1_i5
130bp
 Uncharacterized_protein_OBRU01_10999,_partial_[Operophtera_brumata]
GO:0000287 F magnesium ion binding
GO:0005737 C cytoplasm
GO:0008897 F holo-[acyl-carrier-protein] synthase activity
GO:0016740 F transferase activity
GO:0019878 P lysine biosynthetic process via aminoadipic acid
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
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