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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
751 O_BomoMSG10677_complete:A_BomoMSG_c22835_g1_i1
482bp
 sorting_nexin-17_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:1990126 P endocytic recycling
752 O_BomoMSG10678_complete:A_BomoMSG_c22837_g1_i1
101bp
 NADH_dehydrogenase_[ubiquinone]_iron-sulfur_protein_5-like_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0005758 C mitochondrial intermembrane space
GO:0016020 C membrane
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
753 O_BomoMSG10679_complete:A_BomoMSG_c22839_g1_i1
210bp
 RPA43_N_protein_[Bombyx_mori]
GO:0001054 F RNA polymerase I activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0015630 C microtubule cytoskeleton
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
754 O_BomoMSG1067_internal:A_BomoMSG_c5011_g1_i1
109bp
755 O_BomoMSG10680_3prime_partial:A_BomoMSG_c22840_g1_i1
223bp
 microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
756 O_BomoMSG10681_complete:A_BomoMSG_c22840_g1_i1
194bp
757 O_BomoMSG10682_internal:A_BomoMSG_c22840_g1_i2
145bp
 microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
758 O_BomoMSG10683_3prime_partial:A_BomoMSG_c22840_g1_i2
118bp
759 O_BomoMSG10684_internal:A_BomoMSG_c22840_g1_i3
212bp
 microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
760 O_BomoMSG10685_complete:A_BomoMSG_c22840_g1_i3
180bp
761 O_BomoMSG10686_5prime_partial:A_BomoMSG_c22841_g2_i1
143bp
 exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
762 O_BomoMSG10687_5prime_partial:A_BomoMSG_c22841_g2_i1
140bp
763 O_BomoMSG10688_internal:A_BomoMSG_c22841_g2_i2
154bp
 exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
764 O_BomoMSG10689_5prime_partial:A_BomoMSG_c22842_g1_i1
573bp
 survivin-1_isoform_X1_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001890 P placenta development
GO:0004842 F ubiquitin-protein transferase activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0009966 P regulation of signal transduction
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030414 F peptidase inhibitor activity
GO:0030496 C midbody
GO:0032465 P regulation of cytokinesis
GO:0042127 P regulation of cell population proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0051301 P cell division
GO:0060711 P labyrinthine layer development
GO:0060712 P spongiotrophoblast layer development
GO:0061631 F ubiquitin conjugating enzyme activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
765 O_BomoMSG1068_internal:A_BomoMSG_c5012_g1_i1
175bp
 uncharacterized_protein_LOC101739573_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0003682 F chromatin binding
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0042393 F histone binding
GO:0043197 C dendritic spine
GO:0043198 C dendritic shaft
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0051491 P positive regulation of filopodium assembly
GO:0060999 P positive regulation of dendritic spine development
GO:0070491 F DNA-binding transcription factor binding
GO:0098815 P modulation of excitatory postsynaptic potential
GO:1902897 P regulation of postsynaptic density protein 95 clustering
GO:1902952 P positive regulation of dendritic spine maintenance
766 O_BomoMSG10690_5prime_partial:A_BomoMSG_c22842_g1_i1
163bp
767 O_BomoMSG10691_5prime_partial:A_BomoMSG_c22844_g1_i1
281bp
 lysophospholipid_acyltransferase_1_isoform_X2_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0006644 P phospholipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
768 O_BomoMSG10692_5prime_partial:A_BomoMSG_c22847_g1_i1
174bp
 U2_snRNP-associated_SURP_motif-containing_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006396 P RNA processing
GO:0008150 P biological_process
GO:0044822 F RNA binding
769 O_BomoMSG10693_complete:A_BomoMSG_c22847_g1_i1
120bp
770 O_BomoMSG10694_5prime_partial:A_BomoMSG_c22848_g1_i1
241bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
771 O_BomoMSG10695_5prime_partial:A_BomoMSG_c22848_g1_i2
347bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
772 O_BomoMSG10696_5prime_partial:A_BomoMSG_c22848_g1_i3
225bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
773 O_BomoMSG10697_5prime_partial:A_BomoMSG_c22850_g1_i1
163bp
 endoplasmic_reticulum_resident_protein_44_isoform_X1_[Bombyx_mori]
774 O_BomoMSG10698_3prime_partial:A_BomoMSG_c22851_g1_i1
228bp
 RB-associated_KRAB_zinc_finger_protein_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001701 P in utero embryonic development
GO:0001763 P morphogenesis of a branching structure
GO:0001892 P embryonic placenta development
GO:0001893 P maternal placenta development
GO:0003170 P heart valve development
GO:0003279 P cardiac septum development
GO:0003281 P ventricular septum development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0008168 F methyltransferase activity
GO:0009791 P post-embryonic development
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0016740 F transferase activity
GO:0030889 P negative regulation of B cell proliferation
GO:0031665 P negative regulation of lipopolysaccharide-mediated signaling pathway
GO:0032259 P methylation
GO:0035904 P aorta development
GO:0042127 P regulation of cell population proliferation
GO:0042462 P eye photoreceptor cell development
GO:0042826 F histone deacetylase binding
GO:0043565 F sequence-specific DNA binding
GO:0045165 P cell fate commitment
GO:0045579 P positive regulation of B cell differentiation
GO:0046872 F metal ion binding
GO:0048844 P artery morphogenesis
GO:0048869 P cellular developmental process
GO:0060576 P intestinal epithelial cell development
GO:0060707 P trophoblast giant cell differentiation
GO:0060976 P coronary vasculature development
GO:1990654 P sebum secreting cell proliferation
775 O_BomoMSG10699_internal:A_BomoMSG_c22851_g1_i2
327bp
 RB-associated_KRAB_zinc_finger_protein_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001885 P endothelial cell development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006968 P cellular defense response
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
776 O_BomoMSG1069_complete:A_BomoMSG_c5034_g1_i1
104bp
777 O_BomoMSG106_complete:A_BomoMSG_c376_g1_i1
112bp
778 O_BomoMSG10700_5prime_partial:A_BomoMSG_c22852_g3_i1
154bp
 cytoplasmic_FMR1-interacting_protein_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006909 P phagocytosis
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008360 P regulation of cell shape
GO:0017048 F small GTPase binding
GO:0022416 P chaeta development
GO:0030031 P cell projection assembly
GO:0030154 P cell differentiation
GO:0030866 P cortical actin cytoskeleton organization
GO:0031209 C SCAR complex
GO:0033627 P cell adhesion mediated by integrin
GO:0045177 C apical part of cell
GO:0045202 C synapse
GO:0050807 P regulation of synapse organization
779 O_BomoMSG10701_5prime_partial:A_BomoMSG_c22852_g3_i1
131bp
780 O_BomoMSG10702_5prime_partial:A_BomoMSG_c22853_g1_i2
152bp
 probable_palmitoyltransferase_ZDHHC24_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
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