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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
721 O_BomoMSG1064_internal:A_BomoMSG_c4990_g1_i1
124bp
 gastrula_zinc_finger_protein_XlCGF46.1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
722 O_BomoMSG10650_5prime_partial:A_BomoMSG_c22819_g2_i3
406bp
 zinc_finger_RNA-binding_protein_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
723 O_BomoMSG10651_complete:A_BomoMSG_c22819_g2_i3
203bp
724 O_BomoMSG10652_complete:A_BomoMSG_c22819_g2_i3
153bp
725 O_BomoMSG10653_complete:A_BomoMSG_c22819_g2_i3
139bp
 zinc_finger_RNA-binding_protein_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
726 O_BomoMSG10654_5prime_partial:A_BomoMSG_c22819_g2_i3
118bp
727 O_BomoMSG10655_5prime_partial:A_BomoMSG_c22819_g2_i4
608bp
 zinc_finger_RNA-binding_protein_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
728 O_BomoMSG10656_complete:A_BomoMSG_c22819_g2_i4
186bp
729 O_BomoMSG10657_complete:A_BomoMSG_c22819_g2_i4
153bp
730 O_BomoMSG10658_5prime_partial:A_BomoMSG_c22819_g2_i4
118bp
731 O_BomoMSG10659_complete:A_BomoMSG_c22820_g1_i1
139bp
 LSM1-like_protein_[Bombyx_mori]
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000339 F RNA cap binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0019827 P stem cell population maintenance
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0045665 P negative regulation of neuron differentiation
GO:0071044 P histone mRNA catabolic process
732 O_BomoMSG1065_internal:A_BomoMSG_c5000_g1_i1
106bp
 gamma-glutamyltranspeptidase_1_isoform_X3_[Bombyx_mori]
GO:0002682 P regulation of immune system process
GO:0003840 F obsolete gamma-glutamyltransferase activity
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006508 P proteolysis
GO:0006536 P glutamate metabolic process
GO:0006749 P glutathione metabolic process
GO:0006750 P glutathione biosynthetic process
GO:0006751 P glutathione catabolic process
GO:0007283 P spermatogenesis
GO:0008233 F peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016787 F hydrolase activity
GO:0019344 P cysteine biosynthetic process
GO:0019370 P leukotriene biosynthetic process
GO:0031638 P zymogen activation
GO:0031988 C vesicle
GO:0036374 F glutathione hydrolase activity
GO:0050727 P regulation of inflammatory response
GO:0060427 P lung connective tissue development
GO:0070062 C extracellular exosome
GO:0071260 P cellular response to mechanical stimulus
733 O_BomoMSG10660_5prime_partial:A_BomoMSG_c22821_g1_i1
144bp
 uncharacterized_protein_LOC101739152_[Bombyx_mori]
734 O_BomoMSG10661_5prime_partial:A_BomoMSG_c22821_g1_i2
297bp
 uncharacterized_protein_LOC101739152_[Bombyx_mori]
735 O_BomoMSG10662_5prime_partial:A_BomoMSG_c22821_g1_i2
172bp
736 O_BomoMSG10663_internal:A_BomoMSG_c22824_g1_i1
277bp
 uncharacterized_protein_LOC101744111_[Bombyx_mori]
737 O_BomoMSG10664_internal:A_BomoMSG_c22826_g1_i1
247bp
 uncharacterized_protein_LOC101744337_[Bombyx_mori]
738 O_BomoMSG10665_complete:A_BomoMSG_c22826_g1_i1
102bp
739 O_BomoMSG10666_complete:A_BomoMSG_c22827_g1_i1
193bp
 U3_small_nucleolar_ribonucleoprotein_protein_IMP4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0032040 C small-subunit processome
GO:0034457 C Mpp10 complex
GO:0042134 F rRNA primary transcript binding
GO:0042254 P ribosome biogenesis
740 O_BomoMSG10667_complete:A_BomoMSG_c22827_g1_i1
130bp
 U3_small_nucleolar_ribonucleoprotein_protein_IMP4_[Bombyx_mori]
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034457 C Mpp10 complex
GO:0042134 F rRNA primary transcript binding
741 O_BomoMSG10668_internal:A_BomoMSG_c22828_g2_i1
234bp
 trithorax_group_protein_osa_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0014017 P neuroblast fate commitment
GO:0016055 P Wnt signaling pathway
GO:0016568 P chromatin organization
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0035060 C brahma complex
GO:0042058 P regulation of epidermal growth factor receptor signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046530 P photoreceptor cell differentiation
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0090544 C SWI/SNF superfamily-type complex
742 O_BomoMSG10669_5prime_partial:A_BomoMSG_c22828_g2_i1
113bp
743 O_BomoMSG1066_internal:A_BomoMSG_c5011_g1_i1
110bp
 PREDICTED:_uncharacterized_protein_LOC106710540_[Papilio_machaon]
744 O_BomoMSG10670_internal:A_BomoMSG_c22828_g2_i2
136bp
745 O_BomoMSG10671_internal:A_BomoMSG_c22828_g2_i2
135bp
 trithorax_group_protein_osa_[Bombyx_mori]
746 O_BomoMSG10672_5prime_partial:A_BomoMSG_c22828_g2_i2
113bp
747 O_BomoMSG10673_complete:A_BomoMSG_c22833_g1_i1
404bp
 potassium_channel_subfamily_K_member_3_[Bombyx_mori]
GO:0005267 F potassium channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0015269 F calcium-activated potassium channel activity
GO:0015271 F outward rectifier potassium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022841 F potassium ion leak channel activity
GO:0030322 P stabilization of membrane potential
GO:0071435 P potassium ion export across plasma membrane
GO:0071467 P cellular response to pH
GO:0071805 P potassium ion transmembrane transport
748 O_BomoMSG10674_5prime_partial:A_BomoMSG_c22833_g1_i1
117bp
749 O_BomoMSG10675_internal:A_BomoMSG_c22834_g1_i1
135bp
 uncharacterized_protein_LOC101740329_[Bombyx_mori]
750 O_BomoMSG10676_internal:A_BomoMSG_c22834_g1_i2
275bp
 uncharacterized_protein_LOC101740329_[Bombyx_mori]
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