Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
7321	O_BomoMSG16590_internal:A_BomoMSG_c25551_g2_i3 166bp	Bomo_Chr1	heparanase-like_protein_[Bombyx_mori]	GO:0004566 F beta-glucuronidase activity GO:0005515 F protein binding GO:0005576 C extracellular region GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005764 C lysosome GO:0005765 C lysosomal membrane GO:0005975 P carbohydrate metabolic process GO:0006027 P glycosaminoglycan catabolic process GO:0006029 P proteoglycan metabolic process GO:0007155 P cell adhesion GO:0007160 P cell-matrix adhesion GO:0010575 P positive regulation of vascular endothelial growth factor production GO:0016020 C membrane GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0030194 P positive regulation of blood coagulation GO:0030200 P heparan sulfate proteoglycan catabolic process GO:0030305 F heparanase activity GO:0033690 P positive regulation of osteoblast proliferation GO:0042060 P wound healing GO:0043202 C lysosomal lumen GO:0043231 C intracellular membrane-bounded organelle GO:0045121 C membrane raft GO:0045545 F syndecan binding GO:0046983 F protein dimerization activity GO:0051797 P regulation of hair follicle development GO:0051798 P positive regulation of hair follicle development GO:0051897 P positive regulation of protein kinase B signaling GO:0060055 P angiogenesis involved in wound healing GO:0061042 P vascular wound healing
7322	O_BomoMSG16591_complete:A_BomoMSG_c25553_g1_i1 261bp	Bomo_Chr17	nudix_hydrolase_8_[Bombyx_mori]	GO:0005829 C cytosol GO:0008152 P metabolic process GO:0009611 P response to wounding GO:0016787 F hydrolase activity GO:0046872 F metal ion binding
7323	O_BomoMSG16592_complete:A_BomoMSG_c25553_g1_i3 114bp	Bomo_Chr17	nudix_hydrolase_8_[Bombyx_mori]	GO:0000210 F NAD+ diphosphatase activity GO:0005829 C cytosol GO:0006979 P response to oxidative stress GO:0008152 P metabolic process GO:0016787 F hydrolase activity GO:0046872 F metal ion binding GO:0047631 F ADP-ribose diphosphatase activity GO:0051287 F NAD binding
7324	O_BomoMSG16593_5prime_partial:A_BomoMSG_c25554_g1_i1 380bp	Bomo_Chr28	uncharacterized_protein_LOC101735769_isoform_X1_[Bombyx_mori]
7325	O_BomoMSG16594_complete:A_BomoMSG_c25554_g1_i1 246bp	Bomo_Chr28	uncharacterized_protein_LOC101735769_isoform_X1_[Bombyx_mori]
7326	O_BomoMSG16595_5prime_partial:A_BomoMSG_c25554_g1_i2 418bp	Bomo_Chr28	uncharacterized_protein_LOC101735769_isoform_X1_[Bombyx_mori]
7327	O_BomoMSG16596_complete:A_BomoMSG_c25554_g1_i2 246bp	Bomo_Chr28	uncharacterized_protein_LOC101735769_isoform_X1_[Bombyx_mori]
7328	O_BomoMSG16597_5prime_partial:A_BomoMSG_c25554_g1_i3 219bp	Bomo_Chr28	uncharacterized_protein_LOC101735769_isoform_X2_[Bombyx_mori]
7329	O_BomoMSG16598_complete:A_BomoMSG_c25554_g1_i5 320bp	Bomo_Chr28	uncharacterized_protein_LOC101735769_isoform_X1_[Bombyx_mori]
7330	O_BomoMSG16599_complete:A_BomoMSG_c25554_g1_i5 246bp	Bomo_Chr28	uncharacterized_protein_LOC101735769_isoform_X1_[Bombyx_mori]
7331	O_BomoMSG1659_3prime_partial:A_BomoMSG_c7910_g1_i1 125bp	Bomo_Chr23	organic_cation_transporter_protein_[Bombyx_mori]	GO:0005886 C plasma membrane GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0055085 P transmembrane transport
7332	O_BomoMSG165_internal:A_BomoMSG_c653_g1_i1 125bp	Bomo_Chr24
7333	O_BomoMSG16600_complete:A_BomoMSG_c25555_g1_i1 320bp	Bomo_Chr16	cell_division_cycle_2_[Bombyx_mori]	GO:0000082 P G1/S transition of mitotic cell cycle GO:0000086 P G2/M transition of mitotic cell cycle GO:0000166 F nucleotide binding GO:0000278 P mitotic cell cycle GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004693 F cyclin-dependent protein serine/threonine kinase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005875 C microtubule associated complex GO:0006468 P protein phosphorylation GO:0006974 P cellular response to DNA damage stimulus GO:0007049 P cell cycle GO:0007067 P mitotic cell cycle GO:0007095 P mitotic G2 DNA damage checkpoint signaling GO:0007140 P male meiotic nuclear division GO:0007141 P male meiosis I GO:0007283 P spermatogenesis GO:0007284 P spermatogonial cell division GO:0008315 P G2/MI transition of meiotic cell cycle GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0022008 P neurogenesis GO:0030707 P ovarian follicle cell development GO:0032880 P regulation of protein localization GO:0044818 P mitotic G2/M transition checkpoint GO:0048142 P germarium-derived cystoblast division GO:0051301 P cell division GO:0051726 P regulation of cell cycle GO:0055059 P asymmetric neuroblast division GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
7334	O_BomoMSG16601_complete:A_BomoMSG_c25557_g1_i2 361bp	Bomo_Chr18	uncharacterized_protein_LOC101736099_[Bombyx_mori]
7335	O_BomoMSG16602_5prime_partial:A_BomoMSG_c25559_g1_i1 682bp	Bomo_Chr22	PREDICTED:_protein_piccolo-like_[Amyelois_transitella]
7336	O_BomoMSG16603_complete:A_BomoMSG_c25559_g1_i1 134bp	Bomo_Chr22
7337	O_BomoMSG16604_complete:A_BomoMSG_c25559_g1_i1 110bp	Bomo_Chr22
7338	O_BomoMSG16605_3prime_partial:A_BomoMSG_c25560_g1_i1 365bp	Bomo_Chr14	eukaryotic_translation_initiation_factor_2D_isoform_X1_[Bombyx_mori]	GO:0001731 P formation of translation preinitiation complex GO:0002192 P IRES-dependent translational initiation of linear mRNA GO:0003723 F RNA binding GO:0003743 F translation initiation factor activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006412 P translation GO:0006413 P translational initiation GO:0022627 C cytosolic small ribosomal subunit GO:0032790 P ribosome disassembly
7339	O_BomoMSG16606_complete:A_BomoMSG_c25560_g1_i1 140bp	Bomo_Chr14
7340	O_BomoMSG16607_internal:A_BomoMSG_c25560_g1_i2 236bp	Bomo_Chr14	eukaryotic_translation_initiation_factor_2D_isoform_X1_[Bombyx_mori]	GO:0001731 P formation of translation preinitiation complex GO:0002192 P IRES-dependent translational initiation of linear mRNA GO:0003723 F RNA binding GO:0003743 F translation initiation factor activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006412 P translation GO:0006413 P translational initiation GO:0022627 C cytosolic small ribosomal subunit GO:0032790 P ribosome disassembly
7341	O_BomoMSG16608_internal:A_BomoMSG_c25560_g1_i3 164bp	Bomo_Chr14	eukaryotic_translation_initiation_factor_2D_isoform_X1_[Bombyx_mori]	GO:0001731 P formation of translation preinitiation complex GO:0002192 P IRES-dependent translational initiation of linear mRNA GO:0003723 F RNA binding GO:0003743 F translation initiation factor activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006412 P translation GO:0006413 P translational initiation GO:0022627 C cytosolic small ribosomal subunit GO:0032790 P ribosome disassembly
7342	O_BomoMSG16609_complete:A_BomoMSG_c25560_g1_i4 108bp	Bomo_Chr14	eukaryotic_translation_initiation_factor_2D_isoform_X2_[Bombyx_mori]	GO:0001731 P formation of translation preinitiation complex GO:0002192 P IRES-dependent translational initiation of linear mRNA GO:0003723 F RNA binding GO:0003743 F translation initiation factor activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006412 P translation GO:0006413 P translational initiation GO:0022627 C cytosolic small ribosomal subunit GO:0032790 P ribosome disassembly
7343	O_BomoMSG1660_5prime_partial:A_BomoMSG_c7923_g1_i1 121bp		hypothetical_protein_HMPREF1043_0707_[Streptococcus_anginosus_subsp._whileyi_CCUG_39159]
7344	O_BomoMSG16610_3prime_partial:A_BomoMSG_c25560_g1_i5 347bp	Bomo_Chr14	eukaryotic_translation_initiation_factor_2D_isoform_X1_[Bombyx_mori]	GO:0001731 P formation of translation preinitiation complex GO:0002192 P IRES-dependent translational initiation of linear mRNA GO:0003723 F RNA binding GO:0003743 F translation initiation factor activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006412 P translation GO:0006413 P translational initiation GO:0022627 C cytosolic small ribosomal subunit GO:0032790 P ribosome disassembly
7345	O_BomoMSG16611_complete:A_BomoMSG_c25560_g1_i5 140bp	Bomo_Chr14
7346	O_BomoMSG16612_complete:A_BomoMSG_c25562_g1_i2 310bp	Bomo_Chr14	GDP-D-glucose_phosphorylase_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0005085 F guanyl-nucleotide exchange factor activity GO:0005737 C cytoplasm GO:0006006 P glucose metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0043547 P positive regulation of GTPase activity GO:0080048 F GDP-D-glucose phosphorylase activity
7347	O_BomoMSG16613_complete:A_BomoMSG_c25563_g1_i1 251bp	Bomo_Chr28	cytochrome_c_oxidase_assembly_factor_7_homolog_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process
7348	O_BomoMSG16614_complete:A_BomoMSG_c25563_g1_i2 109bp	Bomo_Chr28	cytochrome_c_oxidase_assembly_factor_7_homolog_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process
7349	O_BomoMSG16615_internal:A_BomoMSG_c25565_g1_i1 294bp	Bomo_Chr22	protein_transport_protein_Sec24A_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005737 C cytoplasm GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0006886 P intracellular protein transport GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport GO:0008270 F zinc ion binding GO:0015031 P protein transport GO:0016020 C membrane GO:0016192 P vesicle-mediated transport GO:0030127 C COPII vesicle coat GO:0045714 P obsolete regulation of low-density lipoprotein particle receptor biosynthetic process GO:0048471 C perinuclear region of cytoplasm GO:0050714 P positive regulation of protein secretion GO:2000189 P cholesterol homeostasis
7350	O_BomoMSG16616_5prime_partial:A_BomoMSG_c25565_g1_i1 175bp	Bomo_Chr22