Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
7291	O_BomoMSG16563_complete:A_BomoMSG_c25545_g2_i1 123bp	Bomo_Chr23
7292	O_BomoMSG16564_complete:A_BomoMSG_c25545_g2_i2 368bp	Bomo_Chr23	choline/ethanolamine_kinase_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004103 F choline kinase activity GO:0004305 F ethanolamine kinase activity GO:0005524 F ATP binding GO:0005829 C cytosol GO:0006629 P lipid metabolic process GO:0006646 P phosphatidylethanolamine biosynthetic process GO:0006656 P phosphatidylcholine biosynthetic process GO:0006657 P CDP-choline pathway GO:0008654 P phospholipid biosynthetic process GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0046474 P glycerophospholipid biosynthetic process
7293	O_BomoMSG16565_complete:A_BomoMSG_c25545_g2_i2 169bp	Bomo_Chr23
7294	O_BomoMSG16566_5prime_partial:A_BomoMSG_c25545_g2_i2 110bp	Bomo_Chr23
7295	O_BomoMSG16567_complete:A_BomoMSG_c25545_g2_i4 123bp	Bomo_Chr23
7296	O_BomoMSG16568_complete:A_BomoMSG_c25545_g2_i5 462bp	Bomo_Chr23	choline/ethanolamine_kinase_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004103 F choline kinase activity GO:0004305 F ethanolamine kinase activity GO:0005524 F ATP binding GO:0005829 C cytosol GO:0006629 P lipid metabolic process GO:0006646 P phosphatidylethanolamine biosynthetic process GO:0006656 P phosphatidylcholine biosynthetic process GO:0006657 P CDP-choline pathway GO:0008654 P phospholipid biosynthetic process GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0046474 P glycerophospholipid biosynthetic process
7297	O_BomoMSG16569_complete:A_BomoMSG_c25545_g2_i5 169bp	Bomo_Chr23
7298	O_BomoMSG1656_internal:A_BomoMSG_c7904_g1_i1 113bp	Bomo_Chr15	mucin-5AC_[Bombyx_mori]
7299	O_BomoMSG16570_complete:A_BomoMSG_c25545_g2_i5 123bp	Bomo_Chr23
7300	O_BomoMSG16571_5prime_partial:A_BomoMSG_c25546_g1_i1 179bp	Bomo_Chr24	tubulin-specific_chaperone_E_[Bombyx_mori]	GO:0005737 C cytoplasm GO:0005856 C cytoskeleton GO:0007023 P post-chaperonin tubulin folding pathway
7301	O_BomoMSG16572_complete:A_BomoMSG_c25546_g1_i2 576bp	Bomo_Chr24	tubulin-specific_chaperone_E_[Bombyx_mori]	GO:0000226 P microtubule cytoskeleton organization GO:0005737 C cytoplasm GO:0005856 C cytoskeleton GO:0006457 P protein folding GO:0007021 P tubulin complex assembly GO:0007023 P post-chaperonin tubulin folding pathway GO:0007409 P axonogenesis GO:0008344 P adult locomotory behavior GO:0009791 P post-embryonic development GO:0014889 P muscle atrophy GO:0048589 P developmental growth GO:0048936 P peripheral nervous system neuron axonogenesis GO:0051082 F unfolded protein binding
7302	O_BomoMSG16573_3prime_partial:A_BomoMSG_c25547_g1_i2 1017bp	Bomo_Chr3	probable_ATP-dependent_RNA_helicase_DDX46_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000398 P mRNA splicing, via spliceosome GO:0003674 F molecular_function GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0004004 F RNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0008150 P biological_process GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0010501 P RNA secondary structure unwinding GO:0015030 C Cajal body GO:0016020 C membrane GO:0016607 C nuclear speck GO:0016787 F hydrolase activity
7303	O_BomoMSG16574_complete:A_BomoMSG_c25547_g1_i2 148bp	Bomo_Chr3
7304	O_BomoMSG16575_complete:A_BomoMSG_c25547_g1_i2 130bp	Bomo_Chr3
7305	O_BomoMSG16576_complete:A_BomoMSG_c25547_g1_i2 124bp	Bomo_Chr3	hypothetical_protein_AX774_g2527,_partial_[Zancudomyces_culisetae]
7306	O_BomoMSG16577_internal:A_BomoMSG_c25547_g1_i3 944bp	Bomo_Chr3	probable_ATP-dependent_RNA_helicase_DDX46_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000398 P mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0004004 F RNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0007420 P brain development GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0010501 P RNA secondary structure unwinding GO:0015030 C Cajal body GO:0016607 C nuclear speck GO:0016787 F hydrolase activity GO:0031017 P exocrine pancreas development GO:0048546 P digestive tract morphogenesis GO:0072576 P liver morphogenesis
7307	O_BomoMSG16578_complete:A_BomoMSG_c25547_g1_i3 130bp	Bomo_Chr3
7308	O_BomoMSG16579_complete:A_BomoMSG_c25547_g1_i3 124bp	Bomo_Chr3	hypothetical_protein_AX774_g2527,_partial_[Zancudomyces_culisetae]
7309	O_BomoMSG1657_internal:A_BomoMSG_c7908_g1_i1 153bp	Bomo_Chr8	NFX1-type_zinc_finger-containing_protein_1_[Bombyx_mori]
7310	O_BomoMSG16580_5prime_partial:A_BomoMSG_c25548_g1_i1 356bp	Bomo_Chr19	CWF19-like_protein_1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0003824 F catalytic activity GO:0005575 C cellular_component GO:0008150 P biological_process GO:0008152 P metabolic process
7311	O_BomoMSG16581_complete:A_BomoMSG_c25548_g1_i1 144bp	Bomo_Chr19	CWF19-like_protein_1_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005575 C cellular_component GO:0008150 P biological_process GO:0008152 P metabolic process
7312	O_BomoMSG16582_5prime_partial:A_BomoMSG_c25548_g1_i2 217bp	Bomo_Chr19	CWF19-like_protein_1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0003824 F catalytic activity GO:0005575 C cellular_component GO:0008150 P biological_process GO:0008152 P metabolic process
7313	O_BomoMSG16583_complete:A_BomoMSG_c25548_g1_i2 144bp	Bomo_Chr19	CWF19-like_protein_1_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005575 C cellular_component GO:0008150 P biological_process GO:0008152 P metabolic process
7314	O_BomoMSG16584_5prime_partial:A_BomoMSG_c25548_g1_i3 240bp	Bomo_Chr19	CWF19-like_protein_1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0003824 F catalytic activity GO:0005575 C cellular_component GO:0008150 P biological_process GO:0008152 P metabolic process
7315	O_BomoMSG16585_complete:A_BomoMSG_c25548_g1_i3 144bp	Bomo_Chr19	CWF19-like_protein_1_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005575 C cellular_component GO:0008150 P biological_process GO:0008152 P metabolic process
7316	O_BomoMSG16586_3prime_partial:A_BomoMSG_c25549_g1_i1 420bp	Bomo_Chr7	ras_association_domain-containing_protein_8_[Bombyx_mori]	GO:0007165 P signal transduction
7317	O_BomoMSG16587_5prime_partial:A_BomoMSG_c25551_g1_i1 142bp	Bomo_Chr1	heparanase-like_protein_[Bombyx_mori]	GO:0005576 C extracellular region GO:0005578 C extracellular matrix GO:0005622 C intracellular anatomical structure GO:0005886 C plasma membrane GO:0005975 P carbohydrate metabolic process GO:0006027 P glycosaminoglycan catabolic process GO:0008150 P biological_process GO:0008284 P positive regulation of cell population proliferation GO:0016020 C membrane GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0030198 P extracellular matrix organization GO:0030305 F heparanase activity GO:0043395 F heparan sulfate proteoglycan binding
7318	O_BomoMSG16588_3prime_partial:A_BomoMSG_c25551_g2_i1 380bp	Bomo_Chr1	heparanase-like_protein_[Bombyx_mori]	GO:0004566 F beta-glucuronidase activity GO:0005515 F protein binding GO:0005576 C extracellular region GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005764 C lysosome GO:0005765 C lysosomal membrane GO:0005975 P carbohydrate metabolic process GO:0006027 P glycosaminoglycan catabolic process GO:0006029 P proteoglycan metabolic process GO:0007155 P cell adhesion GO:0007160 P cell-matrix adhesion GO:0010575 P positive regulation of vascular endothelial growth factor production GO:0016020 C membrane GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0030194 P positive regulation of blood coagulation GO:0030200 P heparan sulfate proteoglycan catabolic process GO:0030305 F heparanase activity GO:0033690 P positive regulation of osteoblast proliferation GO:0042060 P wound healing GO:0043202 C lysosomal lumen GO:0043231 C intracellular membrane-bounded organelle GO:0045121 C membrane raft GO:0045545 F syndecan binding GO:0046983 F protein dimerization activity GO:0051797 P regulation of hair follicle development GO:0051798 P positive regulation of hair follicle development GO:0051897 P positive regulation of protein kinase B signaling GO:0060055 P angiogenesis involved in wound healing GO:0061042 P vascular wound healing
7319	O_BomoMSG16589_internal:A_BomoMSG_c25551_g2_i2 294bp	Bomo_Chr1	heparanase-like_protein_[Bombyx_mori]	GO:0004566 F beta-glucuronidase activity GO:0005515 F protein binding GO:0005576 C extracellular region GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005764 C lysosome GO:0005765 C lysosomal membrane GO:0005975 P carbohydrate metabolic process GO:0006027 P glycosaminoglycan catabolic process GO:0006029 P proteoglycan metabolic process GO:0007155 P cell adhesion GO:0007160 P cell-matrix adhesion GO:0010575 P positive regulation of vascular endothelial growth factor production GO:0016020 C membrane GO:0016787 F hydrolase activity GO:0016798 F hydrolase activity, acting on glycosyl bonds GO:0030194 P positive regulation of blood coagulation GO:0030200 P heparan sulfate proteoglycan catabolic process GO:0030305 F heparanase activity GO:0033690 P positive regulation of osteoblast proliferation GO:0042060 P wound healing GO:0043202 C lysosomal lumen GO:0043231 C intracellular membrane-bounded organelle GO:0045121 C membrane raft GO:0045545 F syndecan binding GO:0046983 F protein dimerization activity GO:0051797 P regulation of hair follicle development GO:0051798 P positive regulation of hair follicle development GO:0051897 P positive regulation of protein kinase B signaling GO:0060055 P angiogenesis involved in wound healing GO:0061042 P vascular wound healing
7320	O_BomoMSG1658_5prime_partial:A_BomoMSG_c7909_g1_i1 105bp	Bomo_Chr20	PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X3_[Papilio_machaon]