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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
691 O_BomoMSG10622_5prime_partial:A_BomoMSG_c22807_g1_i1
137bp
 U7_snRNA-associated_Sm-like_protein_LSm10_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005683 C U7 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0017069 F snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0071208 F histone pre-mRNA DCP binding
GO:0071209 F U7 snRNA binding
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
692 O_BomoMSG10623_3prime_partial:A_BomoMSG_c22807_g1_i2
122bp
 uncharacterized_protein_LOC101745092_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022625 C cytosolic large ribosomal subunit
GO:0031305 C integral component of mitochondrial inner membrane
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0033617 P mitochondrial cytochrome c oxidase assembly
693 O_BomoMSG10624_complete:A_BomoMSG_c22807_g1_i3
138bp
 U7_snRNA-associated_Sm-like_protein_LSm10_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005683 C U7 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0017069 F snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0071208 F histone pre-mRNA DCP binding
GO:0071209 F U7 snRNA binding
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
694 O_BomoMSG10625_complete:A_BomoMSG_c22807_g1_i4
138bp
 U7_snRNA-associated_Sm-like_protein_LSm10_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005683 C U7 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0017069 F snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0071208 F histone pre-mRNA DCP binding
GO:0071209 F U7 snRNA binding
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
695 O_BomoMSG10626_5prime_partial:A_BomoMSG_c22809_g1_i1
130bp
 LOW_QUALITY_PROTEIN:_multidrug_resistance-associated_protein_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
696 O_BomoMSG10627_3prime_partial:A_BomoMSG_c22810_g1_i1
137bp
 LOW_QUALITY_PROTEIN:_GPI_mannosyltransferase_3_[Bombyx_mori]
GO:0000030 F mannosyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0097502 P mannosylation
697 O_BomoMSG10628_3prime_partial:A_BomoMSG_c22813_g1_i1
586bp
 transmembrane_GTPase_Marf_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005741 C mitochondrial outer membrane
GO:0005886 C plasma membrane
GO:0006697 P ecdysone biosynthetic process
GO:0007005 P mitochondrion organization
GO:0007029 P endoplasmic reticulum organization
GO:0008053 P mitochondrial fusion
GO:0008344 P adult locomotory behavior
GO:0010636 P positive regulation of mitochondrial fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019896 P axonal transport of mitochondrion
GO:0031966 C mitochondrial membrane
GO:0034389 P lipid droplet organization
GO:0034976 P response to endoplasmic reticulum stress
GO:0070584 P mitochondrion morphogenesis
GO:0090140 P regulation of mitochondrial fission
GO:1904115 C axon cytoplasm
698 O_BomoMSG10629_5prime_partial:A_BomoMSG_c22815_g1_i1
100bp
 uncharacterized_protein_LOC101739462_[Bombyx_mori]
699 O_BomoMSG1062_complete:A_BomoMSG_c4977_g1_i1
113bp
700 O_BomoMSG10630_internal:A_BomoMSG_c22816_g1_i1
484bp
 mediator_of_RNA_polymerase_II_transcription_subunit_12_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0001105 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007406 P negative regulation of neuroblast proliferation
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045498 P sex comb development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
701 O_BomoMSG10631_5prime_partial:A_BomoMSG_c22816_g1_i1
131bp
702 O_BomoMSG10632_complete:A_BomoMSG_c22816_g1_i1
102bp
703 O_BomoMSG10633_internal:A_BomoMSG_c22816_g1_i2
157bp
 mediator_of_RNA_polymerase_II_transcription_subunit_12_[Bombyx_mori]
704 O_BomoMSG10634_5prime_partial:A_BomoMSG_c22816_g1_i2
131bp
705 O_BomoMSG10635_5prime_partial:A_BomoMSG_c22816_g1_i2
115bp
706 O_BomoMSG10636_internal:A_BomoMSG_c22817_g1_i1
340bp
 S-phase_kinase-associated_protein_2_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0042802 F identical protein binding
GO:0042981 P regulation of apoptotic process
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0051726 P regulation of cell cycle
GO:0061630 F ubiquitin protein ligase activity
GO:0071460 P cellular response to cell-matrix adhesion
GO:1902916 P positive regulation of protein polyubiquitination
707 O_BomoMSG10637_3prime_partial:A_BomoMSG_c22817_g1_i1
207bp
708 O_BomoMSG10638_internal:A_BomoMSG_c22817_g1_i2
263bp
 S-phase_kinase-associated_protein_2_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0042802 F identical protein binding
GO:0042981 P regulation of apoptotic process
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0051726 P regulation of cell cycle
GO:0061630 F ubiquitin protein ligase activity
GO:0071460 P cellular response to cell-matrix adhesion
GO:1902916 P positive regulation of protein polyubiquitination
709 O_BomoMSG10639_3prime_partial:A_BomoMSG_c22817_g1_i2
129bp
710 O_BomoMSG1063_internal:A_BomoMSG_c4978_g1_i1
101bp
 LOW_QUALITY_PROTEIN:_cytochrome_P450_6B5_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
711 O_BomoMSG10640_internal:A_BomoMSG_c22817_g1_i3
288bp
 S-phase_kinase-associated_protein_2_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0042802 F identical protein binding
GO:0042981 P regulation of apoptotic process
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0051726 P regulation of cell cycle
GO:0061630 F ubiquitin protein ligase activity
GO:0071460 P cellular response to cell-matrix adhesion
GO:1902916 P positive regulation of protein polyubiquitination
712 O_BomoMSG10641_3prime_partial:A_BomoMSG_c22817_g1_i3
155bp
713 O_BomoMSG10642_complete:A_BomoMSG_c22819_g2_i1
607bp
 zinc_finger_RNA-binding_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
714 O_BomoMSG10643_complete:A_BomoMSG_c22819_g2_i1
186bp
715 O_BomoMSG10644_complete:A_BomoMSG_c22819_g2_i1
153bp
716 O_BomoMSG10645_complete:A_BomoMSG_c22819_g2_i1
107bp
717 O_BomoMSG10646_5prime_partial:A_BomoMSG_c22819_g2_i2
655bp
 zinc_finger_RNA-binding_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
718 O_BomoMSG10647_complete:A_BomoMSG_c22819_g2_i2
186bp
719 O_BomoMSG10648_5prime_partial:A_BomoMSG_c22819_g2_i2
165bp
720 O_BomoMSG10649_complete:A_BomoMSG_c22819_g2_i2
153bp
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