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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
661 O_BomoMSG10596_internal:A_BomoMSG_c22791_g2_i1
238bp
 RB1-inducible_coiled-coil_protein_1_isoform_X2_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0001889 P liver development
GO:0001934 P positive regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007049 P cell cycle
GO:0007254 P JNK cascade
GO:0007507 P heart development
GO:0010506 P regulation of autophagy
GO:0016236 P macroautophagy
GO:0019901 F protein kinase binding
GO:0031965 C nuclear membrane
GO:0034045 C phagophore assembly site membrane
GO:0043066 P negative regulation of apoptotic process
GO:0045793 P positive regulation of cell size
GO:1990316 C Atg1/ULK1 kinase complex
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
662 O_BomoMSG10597_internal:A_BomoMSG_c22791_g2_i2
118bp
 RB1-inducible_coiled-coil_protein_1_isoform_X2_[Bombyx_mori]
663 O_BomoMSG10598_internal:A_BomoMSG_c22791_g3_i1
138bp
 RB1-inducible_coiled-coil_protein_1_isoform_X2_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0001889 P liver development
GO:0001934 P positive regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007049 P cell cycle
GO:0007254 P JNK cascade
GO:0007507 P heart development
GO:0010506 P regulation of autophagy
GO:0016236 P macroautophagy
GO:0019901 F protein kinase binding
GO:0031965 C nuclear membrane
GO:0034045 C phagophore assembly site membrane
GO:0043066 P negative regulation of apoptotic process
GO:0045793 P positive regulation of cell size
GO:1990316 C Atg1/ULK1 kinase complex
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
664 O_BomoMSG10599_internal:A_BomoMSG_c22791_g3_i2
164bp
 RB1-inducible_coiled-coil_protein_1_isoform_X2_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0001889 P liver development
GO:0001934 P positive regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007049 P cell cycle
GO:0007254 P JNK cascade
GO:0007507 P heart development
GO:0010506 P regulation of autophagy
GO:0016236 P macroautophagy
GO:0019901 F protein kinase binding
GO:0031965 C nuclear membrane
GO:0034045 C phagophore assembly site membrane
GO:0043066 P negative regulation of apoptotic process
GO:0045793 P positive regulation of cell size
GO:1990316 C Atg1/ULK1 kinase complex
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
665 O_BomoMSG1059_5prime_partial:A_BomoMSG_c4974_g1_i2
230bp
 thioredoxin_domain-containing_protein_9_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0008479 F queuine tRNA-ribosyltransferase activity
GO:0008616 P queuosine biosynthetic process
GO:0030496 C midbody
GO:0045454 P cell redox homeostasis
666 O_BomoMSG105_internal:A_BomoMSG_c376_g1_i1
242bp
 probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
667 O_BomoMSG10600_complete:A_BomoMSG_c22792_g1_i1
493bp
 monosaccharide-sensing_protein_1_isoform_X2_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
668 O_BomoMSG10601_complete:A_BomoMSG_c22792_g1_i1
103bp
669 O_BomoMSG10602_5prime_partial:A_BomoMSG_c22792_g1_i2
464bp
 monosaccharide-sensing_protein_1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
670 O_BomoMSG10603_5prime_partial:A_BomoMSG_c22793_g1_i1
242bp
 probable_tRNA_(uracil-O(2)-)-methyltransferase,_partial_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016300 F tRNA (uracil) methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
671 O_BomoMSG10604_complete:A_BomoMSG_c22794_g1_i1
725bp
 ER_degradation-enhancing_alpha-mannosidase-like_protein_2_isoform_X1_[Bombyx_mori]
GO:0001948 F protein binding
GO:0004559 F alpha-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006491 P N-glycan processing
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036509 P trimming of terminal mannose on B branch
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0097466 P ubiquitin-dependent glycoprotein ERAD pathway
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:1904380 P endoplasmic reticulum mannose trimming
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
672 O_BomoMSG10605_5prime_partial:A_BomoMSG_c22794_g1_i3
143bp
 ER_degradation-enhancing_alpha-mannosidase-like_protein_2_isoform_X2_[Bombyx_mori]
673 O_BomoMSG10606_5prime_partial:A_BomoMSG_c22794_g1_i4
379bp
 ER_degradation-enhancing_alpha-mannosidase-like_protein_2_isoform_X1_[Bombyx_mori]
GO:0001948 F protein binding
GO:0004559 F alpha-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006491 P N-glycan processing
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036509 P trimming of terminal mannose on B branch
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0097466 P ubiquitin-dependent glycoprotein ERAD pathway
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:1904380 P endoplasmic reticulum mannose trimming
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
674 O_BomoMSG10607_3prime_partial:A_BomoMSG_c22795_g1_i1
106bp
 uncharacterized_protein_LOC101741830_isoform_X1_[Bombyx_mori]
675 O_BomoMSG10608_complete:A_BomoMSG_c22796_g1_i1
1137bp
 FACT_complex_subunit_spt16_isoform_X2_[Bombyx_mori]
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0022008 P neurogenesis
GO:0031491 F nucleosome binding
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
676 O_BomoMSG10609_complete:A_BomoMSG_c22796_g1_i1
164bp
677 O_BomoMSG1060_complete:A_BomoMSG_c4974_g1_i2
110bp
678 O_BomoMSG10610_5prime_partial:A_BomoMSG_c22797_g1_i2
186bp
 spatacsin_[Bombyx_mori]
679 O_BomoMSG10611_5prime_partial:A_BomoMSG_c22797_g1_i3
733bp
 spatacsin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007409 P axonogenesis
GO:0008088 P axo-dendritic transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0048167 P regulation of synaptic plasticity
GO:0048675 P axon extension
GO:0070062 C extracellular exosome
680 O_BomoMSG10612_complete:A_BomoMSG_c22799_g1_i1
470bp
 MAP_kinase-interacting_serine/threonine-protein_kinase_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006468 P protein phosphorylation
GO:0009931 F calcium-dependent protein serine/threonine kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0035556 P intracellular signal transduction
GO:0046777 P protein autophosphorylation
681 O_BomoMSG10613_complete:A_BomoMSG_c22799_g1_i1
141bp
682 O_BomoMSG10614_internal:A_BomoMSG_c22801_g1_i1
139bp
 cell_cycle_checkpoint_protein_RAD1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0003684 F damaged DNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0021762 P substantia nigra development
GO:0030896 C checkpoint clamp complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0051598 P meiotic recombination checkpoint signaling
GO:0071479 P cellular response to ionizing radiation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
683 O_BomoMSG10615_3prime_partial:A_BomoMSG_c22801_g1_i2
270bp
 cell_cycle_checkpoint_protein_RAD1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0003684 F damaged DNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0021762 P substantia nigra development
GO:0030896 C checkpoint clamp complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0051598 P meiotic recombination checkpoint signaling
GO:0071479 P cellular response to ionizing radiation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
684 O_BomoMSG10616_3prime_partial:A_BomoMSG_c22803_g1_i1
137bp
 uncharacterized_protein_LOC101738645_[Bombyx_mori]
685 O_BomoMSG10617_3prime_partial:A_BomoMSG_c22804_g1_i1
604bp
 probable_ATP-dependent_RNA_helicase_Dbp73D_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0042254 P ribosome biogenesis
686 O_BomoMSG10618_complete:A_BomoMSG_c22804_g1_i2
546bp
 probable_ATP-dependent_RNA_helicase_Dbp73D_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0042254 P ribosome biogenesis
687 O_BomoMSG10619_internal:A_BomoMSG_c22805_g1_i1
451bp
 E3_ubiquitin-protein_ligase_TRIP12_isoform_X3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
688 O_BomoMSG1061_complete:A_BomoMSG_c4977_g1_i1
217bp
 vacuolar_protein_sorting-associated_protein_37A_[Bombyx_mori]
GO:0000813 C ESCRT I complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0019058 P viral life cycle
GO:0030496 C midbody
GO:0031902 C late endosome membrane
GO:0036258 P multivesicular body assembly
GO:0039702 P viral budding via host ESCRT complex
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0075733 P intracellular transport of virus
GO:1902188 P obsolete positive regulation of viral release from host cell
GO:1903774 P positive regulation of viral budding via host ESCRT complex
689 O_BomoMSG10620_complete:A_BomoMSG_c22805_g1_i1
102bp
690 O_BomoMSG10621_5prime_partial:A_BomoMSG_c22806_g1_i1
269bp
 tyrosine-protein_phosphatase_[Bombyx_mori]
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