SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6841 O_BomoMSG16158_complete:A_BomoMSG_c25410_g1_i2
149bp
 U11/U12_small_nuclear_ribonucleoprotein_25_kDa_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0045171 C intercellular bridge
6842 O_BomoMSG16159_5prime_partial:A_BomoMSG_c25411_g1_i1
1041bp
 protein_sickie_isoform_X3_[Bombyx_mori]
GO:0002376 P immune system process
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0007015 P actin filament organization
GO:0007409 P axonogenesis
GO:0045087 P innate immune response
GO:0050829 P defense response to Gram-negative bacterium
6843 O_BomoMSG1615_internal:A_BomoMSG_c7813_g1_i1
110bp
6844 O_BomoMSG16160_complete:A_BomoMSG_c25411_g1_i1
168bp
6845 O_BomoMSG16161_complete:A_BomoMSG_c25411_g1_i2
943bp
 protein_sickie_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0007015 P actin filament organization
GO:0007409 P axonogenesis
GO:0045087 P innate immune response
GO:0050829 P defense response to Gram-negative bacterium
6846 O_BomoMSG16162_complete:A_BomoMSG_c25411_g1_i2
168bp
6847 O_BomoMSG16163_5prime_partial:A_BomoMSG_c25411_g1_i3
1209bp
 sickie_[Danaus_plexippus_plexippus]
GO:0002376 P immune system process
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0007015 P actin filament organization
GO:0007409 P axonogenesis
GO:0045087 P innate immune response
GO:0050829 P defense response to Gram-negative bacterium
6848 O_BomoMSG16164_complete:A_BomoMSG_c25411_g1_i3
168bp
6849 O_BomoMSG16165_5prime_partial:A_BomoMSG_c25411_g1_i4
218bp
 protein_sickie_isoform_X7_[Bombyx_mori]
GO:0002376 P immune system process
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0007015 P actin filament organization
GO:0007409 P axonogenesis
GO:0045087 P innate immune response
GO:0050829 P defense response to Gram-negative bacterium
6850 O_BomoMSG16166_3prime_partial:A_BomoMSG_c25412_g1_i1
397bp
 5-methylcytosine_rRNA_methyltransferase_NSUN4_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0016428 F tRNA (cytosine-5-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0019843 F rRNA binding
GO:0030488 P tRNA methylation
GO:0031167 P rRNA methylation
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0070131 P positive regulation of mitochondrial translation
GO:0070181 F small ribosomal subunit rRNA binding
6851 O_BomoMSG16167_3prime_partial:A_BomoMSG_c25412_g1_i2
471bp
 5-methylcytosine_rRNA_methyltransferase_NSUN4_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0016428 F tRNA (cytosine-5-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0019843 F rRNA binding
GO:0030488 P tRNA methylation
GO:0031167 P rRNA methylation
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0070131 P positive regulation of mitochondrial translation
GO:0070181 F small ribosomal subunit rRNA binding
6852 O_BomoMSG16168_5prime_partial:A_BomoMSG_c25412_g1_i2
127bp
6853 O_BomoMSG16169_complete:A_BomoMSG_c25413_g1_i1
157bp
 ubiquitin-conjugating_enzyme_E2_T_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006513 P protein monoubiquitination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0035519 P protein K29-linked ubiquitination
GO:0036297 P interstrand cross-link repair
GO:0044314 P protein K27-linked ubiquitination
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0070979 P protein K11-linked ubiquitination
GO:0085020 P protein K6-linked ubiquitination
6854 O_BomoMSG1616_3prime_partial:A_BomoMSG_c7817_g1_i1
284bp
 WD_repeat_domain_phosphoinositide-interacting_protein_2-like_[Helicoverpa_armigera]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0006497 P protein lipidation
GO:0006914 P autophagy
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0034045 C phagophore assembly site membrane
GO:0034497 P protein localization to phagophore assembly site
GO:0043234 C protein-containing complex
GO:0044804 P autophagy of nucleus
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
6855 O_BomoMSG16170_5prime_partial:A_BomoMSG_c25413_g1_i2
141bp
 ubiquitin-conjugating_enzyme_E2_T_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006513 P protein monoubiquitination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0035519 P protein K29-linked ubiquitination
GO:0036297 P interstrand cross-link repair
GO:0044314 P protein K27-linked ubiquitination
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0070979 P protein K11-linked ubiquitination
GO:0085020 P protein K6-linked ubiquitination
6856 O_BomoMSG16171_complete:A_BomoMSG_c25414_g1_i1
327bp
 nudC_domain-containing_protein_3_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6857 O_BomoMSG16172_complete:A_BomoMSG_c25415_g1_i1
309bp
 elongation_of_very_long_chain_fatty_acids_protein_6_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0019367 P fatty acid elongation, saturated fatty acid
GO:0042759 P long-chain fatty acid biosynthetic process
6858 O_BomoMSG16173_complete:A_BomoMSG_c25416_g1_i2
986bp
 DIS3-like_exonuclease_2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000287 F magnesium ion binding
GO:0000291 P nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004540 F ribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006364 P rRNA processing
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008266 F poly(U) RNA binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010587 P miRNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019827 P stem cell population maintenance
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051306 P mitotic sister chromatid separation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1990074 P polyuridylation-dependent mRNA catabolic process
6859 O_BomoMSG16174_complete:A_BomoMSG_c25416_g1_i2
115bp
6860 O_BomoMSG16175_3prime_partial:A_BomoMSG_c25417_g1_i1
329bp
 protein_phosphatase_1_regulatory_subunit_21_[Bombyx_mori]
GO:0019902 F phosphatase binding
6861 O_BomoMSG16176_5prime_partial:A_BomoMSG_c25417_g1_i1
131bp
6862 O_BomoMSG16177_5prime_partial:A_BomoMSG_c25417_g2_i1
109bp
6863 O_BomoMSG16178_5prime_partial:A_BomoMSG_c25417_g2_i1
107bp
 protein_phosphatase_1_regulatory_subunit_21_[Bombyx_mori]
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019902 F phosphatase binding
6864 O_BomoMSG16179_internal:A_BomoMSG_c25417_g1_i2
317bp
 protein_phosphatase_1_regulatory_subunit_21_[Bombyx_mori]
GO:0019902 F phosphatase binding
6865 O_BomoMSG1617_5prime_partial:A_BomoMSG_c7817_g1_i1
244bp
6866 O_BomoMSG16180_5prime_partial:A_BomoMSG_c25417_g1_i2
131bp
6867 O_BomoMSG16181_5prime_partial:A_BomoMSG_c25417_g2_i2
109bp
6868 O_BomoMSG16182_complete:A_BomoMSG_c25418_g1_i1
175bp
 centromere_protein_S-like_[Bombyx_mori]
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0031297 P replication fork processing
GO:0031398 P positive regulation of protein ubiquitination
GO:0034080 P CENP-A containing chromatin assembly
GO:0036297 P interstrand cross-link repair
GO:0043240 C Fanconi anaemia nuclear complex
GO:0046982 F protein heterodimerization activity
GO:0051301 P cell division
GO:0071821 C FANCM-MHF complex
6869 O_BomoMSG16183_complete:A_BomoMSG_c25419_g1_i3
224bp
 protein_sarah_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005759 C mitochondrial matrix
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0007126 P meiotic cell cycle
GO:0007127 P meiosis I
GO:0007143 P female meiotic nuclear division
GO:0007275 P multicellular organism development
GO:0007343 P egg activation
GO:0007610 P behavior
GO:0007616 P long-term memory
GO:0008355 P olfactory learning
GO:0008597 F calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0019722 P calcium-mediated signaling
GO:0030154 P cell differentiation
GO:0030431 P sleep
GO:0035039 P male pronucleus assembly
GO:0045924 P regulation of female receptivity
GO:0046008 P regulation of female receptivity, post-mating
GO:0048477 P oogenesis
GO:0050790 P regulation of catalytic activity
GO:0051321 P meiotic cell cycle
GO:0070884 P regulation of calcineurin-NFAT signaling cascade
6870 O_BomoMSG16184_3prime_partial:A_BomoMSG_c25420_g1_i1
144bp
 gag-like_protein_[Bombyx_mori]
previous next from show/29137

- SilkBase 1999-2023 -