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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6811 O_BomoMSG16130_complete:A_BomoMSG_c25398_g1_i3
1159bp
 uncharacterized_protein_LOC101736189_[Bombyx_mori]
6812 O_BomoMSG16131_complete:A_BomoMSG_c25398_g1_i3
129bp
6813 O_BomoMSG16132_internal:A_BomoMSG_c25399_g1_i1
127bp
 ubiquitin_conjugation_factor_E4_A_[Bombyx_mori]
6814 O_BomoMSG16133_internal:A_BomoMSG_c25399_g1_i2
151bp
 ubiquitin_conjugation_factor_E4_A_[Bombyx_mori]
6815 O_BomoMSG16134_3prime_partial:A_BomoMSG_c25399_g1_i3
336bp
 ubiquitin_conjugation_factor_E4_A_[Helicoverpa_armigera]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0061630 F ubiquitin protein ligase activity
6816 O_BomoMSG16135_complete:A_BomoMSG_c25400_g1_i1
305bp
 PREDICTED:_uncharacterized_protein_C9orf78_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
6817 O_BomoMSG16136_5prime_partial:A_BomoMSG_c25402_g1_i1
259bp
 inositol_oxygenase-like_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0019310 P inositol catabolic process
GO:0046872 F metal ion binding
GO:0050113 F inositol oxygenase activity
GO:0055114 P obsolete oxidation-reduction process
6818 O_BomoMSG16137_5prime_partial:A_BomoMSG_c25402_g1_i2
302bp
 inositol_oxygenase-like_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0019310 P inositol catabolic process
GO:0046872 F metal ion binding
GO:0050113 F inositol oxygenase activity
GO:0055114 P obsolete oxidation-reduction process
6819 O_BomoMSG16138_5prime_partial:A_BomoMSG_c25404_g1_i1
598bp
 DNA_polymerase_alpha_subunit_B_isoform_X2_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000722 P telomere maintenance via recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005658 C alpha DNA polymerase:primase complex
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
6820 O_BomoMSG16139_complete:A_BomoMSG_c25404_g1_i1
123bp
6821 O_BomoMSG1613_complete:A_BomoMSG_c7811_g1_i2
205bp
 ras-like_GTP-binding_protein_Rho1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000281 P mitotic cytokinesis
GO:0001736 P establishment of planar polarity
GO:0001737 P establishment of imaginal disc-derived wing hair orientation
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0006974 P cellular response to DNA damage stimulus
GO:0007010 P cytoskeleton organization
GO:0007015 P actin filament organization
GO:0007164 P establishment of tissue polarity
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007254 P JNK cascade
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007349 P cellularization
GO:0007368 P determination of left/right symmetry
GO:0007369 P gastrulation
GO:0007370 P ventral furrow formation
GO:0007374 P posterior midgut invagination
GO:0007377 P germ-band extension
GO:0007391 P dorsal closure
GO:0007395 P dorsal closure, spreading of leading edge cells
GO:0007405 P neuroblast proliferation
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007601 P visual perception
GO:0008045 P motor neuron axon guidance
GO:0008347 P glial cell migration
GO:0008354 P germ cell migration
GO:0010004 P gastrulation involving germ band extension
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016203 P muscle attachment
GO:0016318 P ommatidial rotation
GO:0016324 C apical plasma membrane
GO:0016476 P regulation of embryonic cell shape
GO:0019900 F kinase binding
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0030334 P regulation of cell migration
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030866 P cortical actin cytoskeleton organization
GO:0030950 P establishment or maintenance of actin cytoskeleton polarity
GO:0031532 P actin cytoskeleton reorganization
GO:0034613 P cellular protein localization
GO:0035006 P melanization defense response
GO:0035099 P hemocyte migration
GO:0035147 P branch fusion, open tracheal system
GO:0035149 P lumen formation, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035298 P regulation of Malpighian tubule size
GO:0035317 P imaginal disc-derived wing hair organization
GO:0042060 P wound healing
GO:0042249 P establishment of planar polarity of embryonic epithelium
GO:0044291 C cell-cell contact zone
GO:0045179 C apical cortex
GO:0045184 P establishment of protein localization
GO:0045199 P maintenance of epithelial cell apical/basal polarity
GO:0046663 P dorsal closure, leading edge cell differentiation
GO:0046664 P dorsal closure, amnioserosa morphology change
GO:0048812 P neuron projection morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0050770 P regulation of axonogenesis
GO:0050896 P response to stimulus
GO:0051017 P actin filament bundle assembly
GO:0051489 P regulation of filopodium assembly
GO:0051493 P regulation of cytoskeleton organization
GO:0070252 P actin-mediated cell contraction
GO:0070451 C cell hair
GO:0070593 P dendrite self-avoidance
GO:0071896 P protein localization to adherens junction
GO:0071902 P positive regulation of protein serine/threonine kinase activity
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090251 P protein localization involved in establishment of planar polarity
GO:0090254 P cell elongation involved in imaginal disc-derived wing morphogenesis
GO:0090303 P positive regulation of wound healing
GO:1901739 P regulation of myoblast fusion
GO:1903475 P mitotic actomyosin contractile ring assembly
GO:1904059 P regulation of locomotor rhythm
6822 O_BomoMSG16140_complete:A_BomoMSG_c25404_g1_i2
379bp
 DNA_polymerase_alpha_subunit_B_isoform_X2_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000722 P telomere maintenance via recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005658 C alpha DNA polymerase:primase complex
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
6823 O_BomoMSG16141_complete:A_BomoMSG_c25404_g1_i2
123bp
6824 O_BomoMSG16142_5prime_partial:A_BomoMSG_c25404_g1_i3
303bp
 DNA_polymerase_alpha_subunit_B_isoform_X2_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000722 P telomere maintenance via recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005658 C alpha DNA polymerase:primase complex
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
6825 O_BomoMSG16143_complete:A_BomoMSG_c25404_g1_i3
123bp
6826 O_BomoMSG16144_complete:A_BomoMSG_c25405_g1_i2
477bp
 ets_DNA-binding_protein_pokkuri-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000165 P MAPK cascade
GO:0001709 P cell fate determination
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0007254 P JNK cascade
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007391 P dorsal closure
GO:0007464 P R3/R4 cell fate commitment
GO:0007517 P muscle organ development
GO:0008340 P determination of adult lifespan
GO:0008406 P gonad development
GO:0019904 F protein domain specific binding
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035157 P negative regulation of fusion cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0045316 P negative regulation of compound eye photoreceptor development
GO:0045467 P R7 cell development
GO:0045596 P negative regulation of cell differentiation
GO:0045610 P regulation of hemocyte differentiation
GO:0045678 P positive regulation of R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0048666 P neuron development
GO:0048747 P muscle cell development
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0050767 P regulation of neurogenesis
GO:0060233 P oenocyte delamination
GO:0090175 P regulation of establishment of planar polarity
6827 O_BomoMSG16145_5prime_partial:A_BomoMSG_c25405_g1_i3
343bp
 ets_DNA-binding_protein_pokkuri-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000165 P MAPK cascade
GO:0001709 P cell fate determination
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0007254 P JNK cascade
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007391 P dorsal closure
GO:0007464 P R3/R4 cell fate commitment
GO:0007517 P muscle organ development
GO:0008340 P determination of adult lifespan
GO:0008406 P gonad development
GO:0019904 F protein domain specific binding
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035157 P negative regulation of fusion cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0045316 P negative regulation of compound eye photoreceptor development
GO:0045467 P R7 cell development
GO:0045596 P negative regulation of cell differentiation
GO:0045610 P regulation of hemocyte differentiation
GO:0045678 P positive regulation of R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0048666 P neuron development
GO:0048747 P muscle cell development
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0050767 P regulation of neurogenesis
GO:0060233 P oenocyte delamination
GO:0090175 P regulation of establishment of planar polarity
6828 O_BomoMSG16146_5prime_partial:A_BomoMSG_c25406_g1_i2
411bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6829 O_BomoMSG16147_complete:A_BomoMSG_c25406_g1_i2
110bp
6830 O_BomoMSG16148_internal:A_BomoMSG_c25406_g2_i1
135bp
 PREDICTED:_uncharacterized_protein_LOC105118166_[Populus_euphratica]
6831 O_BomoMSG16149_3prime_partial:A_BomoMSG_c25406_g2_i1
135bp
6832 O_BomoMSG1614_complete:A_BomoMSG_c7811_g1_i2
143bp
 hypothetical_protein_[Meteorus_pulchricornis]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6833 O_BomoMSG16150_3prime_partial:A_BomoMSG_c25407_g1_i1
269bp
 unc-112-related_protein_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0048738 P cardiac muscle tissue development
GO:0050829 P defense response to Gram-negative bacterium
GO:0050839 F cell adhesion molecule binding
6834 O_BomoMSG16151_complete:A_BomoMSG_c25407_g1_i1
181bp
6835 O_BomoMSG16152_3prime_partial:A_BomoMSG_c25407_g1_i2
509bp
 unc-112-related_protein_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0048738 P cardiac muscle tissue development
GO:0050829 P defense response to Gram-negative bacterium
GO:0050839 F cell adhesion molecule binding
6836 O_BomoMSG16153_complete:A_BomoMSG_c25407_g1_i2
181bp
6837 O_BomoMSG16154_5prime_partial:A_BomoMSG_c25408_g1_i1
225bp
 uncharacterized_protein_LOC110385684_[Bombyx_mori]
6838 O_BomoMSG16155_5prime_partial:A_BomoMSG_c25408_g1_i2
245bp
 uncharacterized_protein_LOC110385684_[Bombyx_mori]
6839 O_BomoMSG16156_complete:A_BomoMSG_c25408_g1_i3
653bp
 uncharacterized_protein_LOC110385684_[Bombyx_mori]
6840 O_BomoMSG16157_complete:A_BomoMSG_c25410_g1_i1
149bp
 U11/U12_small_nuclear_ribonucleoprotein_25_kDa_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0045171 C intercellular bridge
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