SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6181 O_BomoMSG15564_5prime_partial:A_BomoMSG_c25180_g1_i5
135bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0046872 F metal ion binding
6182 O_BomoMSG15565_complete:A_BomoMSG_c25180_g1_i5
112bp
6183 O_BomoMSG15566_internal:A_BomoMSG_c25180_g1_i6
334bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6184 O_BomoMSG15567_complete:A_BomoMSG_c25181_g1_i1
218bp
 vesicle-trafficking_protein_SEC22b-B_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048280 P vesicle fusion with Golgi apparatus
6185 O_BomoMSG15568_complete:A_BomoMSG_c25181_g1_i2
218bp
 vesicle-trafficking_protein_SEC22b-B_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048280 P vesicle fusion with Golgi apparatus
6186 O_BomoMSG15569_complete:A_BomoMSG_c25181_g1_i4
218bp
 vesicle-trafficking_protein_SEC22b-B_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048280 P vesicle fusion with Golgi apparatus
6187 O_BomoMSG1556_internal:A_BomoMSG_c7611_g1_i1
208bp
 uncharacterized_protein_LOC105842278,_partial_[Bombyx_mori]
6188 O_BomoMSG15570_complete:A_BomoMSG_c25181_g3_i1
106bp
6189 O_BomoMSG15571_5prime_partial:A_BomoMSG_c25181_g4_i1
155bp
 ATP-binding_cassette_sub-family_G_member_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0033344 P cholesterol efflux
GO:0034041 F ABC-type sterol transporter activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0055085 P transmembrane transport
6190 O_BomoMSG15572_complete:A_BomoMSG_c25181_g5_i1
251bp
 signal_recognition_particle_receptor_beta_subunit_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005047 F signal recognition particle binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005785 C signal recognition particle receptor complex
GO:0005789 C endoplasmic reticulum membrane
GO:0005881 C cytoplasmic microtubule
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0036498 P IRE1-mediated unfolded protein response
6191 O_BomoMSG15573_3prime_partial:A_BomoMSG_c25182_g1_i1
127bp
 peptide_deformylase,_mitochondrial_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0008284 P positive regulation of cell population proliferation
GO:0016787 F hydrolase activity
GO:0018206 P peptidyl-methionine modification
GO:0031365 P N-terminal protein amino acid modification
GO:0042586 F peptide deformylase activity
GO:0046872 F metal ion binding
6192 O_BomoMSG15574_internal:A_BomoMSG_c25185_g1_i1
165bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
6193 O_BomoMSG15575_internal:A_BomoMSG_c25185_g2_i1
158bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
6194 O_BomoMSG15576_internal:A_BomoMSG_c25185_g2_i2
331bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
6195 O_BomoMSG15577_complete:A_BomoMSG_c25186_g1_i2
191bp
 uncharacterized_protein_LOC110381649_[Helicoverpa_armigera]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007350 P blastoderm segmentation
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008340 P determination of adult lifespan
GO:0008359 P regulation of bicoid mRNA localization
GO:0042070 P maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis specification
GO:0043565 F sequence-specific DNA binding
GO:0045450 P bicoid mRNA localization
GO:0045451 P pole plasm oskar mRNA localization
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0060322 P head development
GO:0060465 P pharynx development
6196 O_BomoMSG15578_complete:A_BomoMSG_c25186_g1_i3
254bp
 uncharacterized_protein_LOC110381649_[Helicoverpa_armigera]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007350 P blastoderm segmentation
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008340 P determination of adult lifespan
GO:0008359 P regulation of bicoid mRNA localization
GO:0042070 P maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis specification
GO:0043565 F sequence-specific DNA binding
GO:0045450 P bicoid mRNA localization
GO:0045451 P pole plasm oskar mRNA localization
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0060322 P head development
GO:0060465 P pharynx development
6197 O_BomoMSG15579_5prime_partial:A_BomoMSG_c25187_g1_i1
186bp
 vesicle-fusing_ATPase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0008021 C synaptic vesicle
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0032403 F protein-containing complex binding
GO:0035494 P SNARE complex disassembly
GO:0043001 P Golgi to plasma membrane protein transport
GO:0043195 C terminal bouton
GO:0046872 F metal ion binding
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048211 P Golgi vesicle docking
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
6198 O_BomoMSG1557_internal:A_BomoMSG_c7619_g1_i1
175bp
 WD_repeat-containing_and_planar_cell_polarity_effector_protein_fritz_isoform_X5_[Bombyx_mori]
6199 O_BomoMSG15580_complete:A_BomoMSG_c25187_g1_i1
128bp
6200 O_BomoMSG15581_internal:A_BomoMSG_c25187_g2_i1
380bp
 vesicle-fusing_ATPase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0008021 C synaptic vesicle
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0032403 F protein-containing complex binding
GO:0035494 P SNARE complex disassembly
GO:0043001 P Golgi to plasma membrane protein transport
GO:0043195 C terminal bouton
GO:0046872 F metal ion binding
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048211 P Golgi vesicle docking
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
6201 O_BomoMSG15582_5prime_partial:A_BomoMSG_c25187_g1_i2
239bp
 vesicle-fusing_ATPase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0008021 C synaptic vesicle
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0032403 F protein-containing complex binding
GO:0035494 P SNARE complex disassembly
GO:0043001 P Golgi to plasma membrane protein transport
GO:0043195 C terminal bouton
GO:0046872 F metal ion binding
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048211 P Golgi vesicle docking
GO:0098527 C neuromuscular junction of somatic muscle
GO:1900073 P regulation of neuromuscular synaptic transmission
6202 O_BomoMSG15583_complete:A_BomoMSG_c25187_g1_i2
128bp
6203 O_BomoMSG15584_internal:A_BomoMSG_c25188_g1_i2
762bp
 zinc_finger_protein_Xfin_isoform_X2_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
6204 O_BomoMSG15585_complete:A_BomoMSG_c25189_g1_i1
228bp
 uncharacterized_protein_LOC101740229_isoform_X2_[Bombyx_mori]
6205 O_BomoMSG15586_complete:A_BomoMSG_c25189_g1_i1
105bp
6206 O_BomoMSG15587_5prime_partial:A_BomoMSG_c25189_g1_i2
150bp
 uncharacterized_protein_LOC101740229_isoform_X2_[Bombyx_mori]
6207 O_BomoMSG15588_5prime_partial:A_BomoMSG_c25189_g1_i3
124bp
 uncharacterized_protein_LOC101740229_isoform_X2_[Bombyx_mori]
6208 O_BomoMSG15589_complete:A_BomoMSG_c25189_g1_i4
277bp
 uncharacterized_protein_LOC101740229_isoform_X1_[Bombyx_mori]
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006695 P cholesterol biosynthetic process
GO:0008206 P bile acid metabolic process
GO:0015248 F sterol transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016125 P sterol metabolic process
GO:0030301 P cholesterol transport
GO:0032366 P intracellular sterol transport
GO:0032541 C cortical endoplasmic reticulum
GO:0090181 P regulation of cholesterol metabolic process
GO:0097036 P regulation of plasma membrane sterol distribution
6209 O_BomoMSG1558_internal:A_BomoMSG_c7624_g1_i1
104bp
hypothetical_protein_PFLmoz3_04588_[Pseudomonas_fluorescens]
6210 O_BomoMSG15590_complete:A_BomoMSG_c25189_g1_i4
110bp
previous next from show/29137

- SilkBase 1999-2023 -