SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6211 O_BomoMSG15591_complete:A_BomoMSG_c25190_g1_i2
120bp
 ovary_C/EBPg_transcription_factor_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001889 P liver development
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006955 P immune response
GO:0008134 F transcription factor binding
GO:0016071 P mRNA metabolic process
GO:0030183 P B cell differentiation
GO:0042267 P natural killer cell mediated cytotoxicity
GO:0042803 F protein homodimerization activity
GO:0043353 P enucleate erythrocyte differentiation
GO:0043388 P positive regulation of DNA binding
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0043565 F sequence-specific DNA binding
GO:0044377 F RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending
GO:0045078 P positive regulation of interferon-gamma production
GO:0045739 P positive regulation of DNA repair
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0051091 P positive regulation of DNA-binding transcription factor activity
6212 O_BomoMSG15592_complete:A_BomoMSG_c25191_g1_i1
255bp
 uncharacterized_protein_LOC101741741_[Bombyx_mori]
6213 O_BomoMSG15593_complete:A_BomoMSG_c25191_g1_i1
122bp
6214 O_BomoMSG15594_complete:A_BomoMSG_c25192_g1_i3
300bp
 mediator_of_RNA_polymerase_II_transcription_subunit_27_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
6215 O_BomoMSG15595_5prime_partial:A_BomoMSG_c25195_g1_i1
221bp
 monocarboxylate_transporter_14_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
6216 O_BomoMSG15596_internal:A_BomoMSG_c25195_g1_i2
410bp
 monocarboxylate_transporter_14_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
6217 O_BomoMSG15597_3prime_partial:A_BomoMSG_c25196_g1_i1
439bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744024_[Bombyx_mori]
GO:0005576 C extracellular region
6218 O_BomoMSG15598_complete:A_BomoMSG_c25196_g1_i1
163bp
6219 O_BomoMSG15599_5prime_partial:A_BomoMSG_c25196_g1_i1
101bp
6220 O_BomoMSG1559_internal:A_BomoMSG_c7624_g1_i1
104bp
poly(3-hydroxyalkanoate)_granule-associated_protein_PhaF_[Pseudomonas_sp._PE-S1G-1]
6221 O_BomoMSG155_internal:A_BomoMSG_c601_g1_i1
125bp
6222 O_BomoMSG15600_internal:A_BomoMSG_c25196_g1_i2
394bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744024_[Bombyx_mori]
GO:0005576 C extracellular region
6223 O_BomoMSG15601_complete:A_BomoMSG_c25196_g1_i2
163bp
6224 O_BomoMSG15602_5prime_partial:A_BomoMSG_c25196_g1_i2
101bp
6225 O_BomoMSG15603_complete:A_BomoMSG_c25198_g1_i1
606bp
 LOW_QUALITY_PROTEIN:_bifunctional_lysine-specific_demethylase_and_histidyl-hydroxylase_NO66_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
6226 O_BomoMSG15604_complete:A_BomoMSG_c25198_g1_i2
606bp
 LOW_QUALITY_PROTEIN:_bifunctional_lysine-specific_demethylase_and_histidyl-hydroxylase_NO66_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
6227 O_BomoMSG15605_5prime_partial:A_BomoMSG_c25198_g1_i3
253bp
 LOW_QUALITY_PROTEIN:_bifunctional_lysine-specific_demethylase_and_histidyl-hydroxylase_NO66_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
6228 O_BomoMSG15606_3prime_partial:A_BomoMSG_c25199_g1_i1
320bp
 serine/threonine-protein_kinase_GA29083_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
6229 O_BomoMSG15607_3prime_partial:A_BomoMSG_c25200_g1_i1
289bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
6230 O_BomoMSG15608_complete:A_BomoMSG_c25200_g1_i1
118bp
6231 O_BomoMSG15609_internal:A_BomoMSG_c25200_g1_i2
451bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
6232 O_BomoMSG1560_internal:A_BomoMSG_c7628_g1_i1
104bp
6233 O_BomoMSG15610_complete:A_BomoMSG_c25200_g1_i2
118bp
6234 O_BomoMSG15611_internal:A_BomoMSG_c25200_g1_i3
433bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
6235 O_BomoMSG15612_complete:A_BomoMSG_c25200_g1_i3
118bp
6236 O_BomoMSG15613_internal:A_BomoMSG_c25200_g1_i5
534bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
6237 O_BomoMSG15614_complete:A_BomoMSG_c25200_g1_i5
118bp
6238 O_BomoMSG15615_internal:A_BomoMSG_c25200_g1_i6
135bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
6239 O_BomoMSG15616_internal:A_BomoMSG_c25200_g1_i7
108bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
6240 O_BomoMSG15617_internal:A_BomoMSG_c25200_g1_i8
255bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
previous next from show/29137

- SilkBase 1999-2023 -