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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6151 O_BomoMSG15537_complete:A_BomoMSG_c25173_g1_i1
211bp
 endoplasmic_reticulum_protein_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002474 P antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005784 C Sec61 translocon complex
GO:0005789 C endoplasmic reticulum membrane
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0007204 P positive regulation of cytosolic calcium ion concentration
GO:0007283 P spermatogenesis
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0030136 C clathrin-coated vesicle
GO:0032403 F protein-containing complex binding
GO:0032471 P negative regulation of endoplasmic reticulum calcium ion concentration
GO:0032580 C Golgi cisterna membrane
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0042288 F MHC class I protein binding
GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0051561 P positive regulation of mitochondrial calcium ion concentration
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0071556 C integral component of lumenal side of endoplasmic reticulum membrane
GO:0097038 C perinuclear endoplasmic reticulum
GO:1903071 P positive regulation of ER-associated ubiquitin-dependent protein catabolic process
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
6152 O_BomoMSG15538_complete:A_BomoMSG_c25174_g7_i1
175bp
 adenylate_cyclase_[Bombyx_mori]
6153 O_BomoMSG15539_complete:A_BomoMSG_c25174_g8_i1
613bp
 sequestosome-1_isoform_X2_[Bombyx_mori]
GO:0000407 C phagophore assembly site
GO:0000932 C P-body
GO:0001934 P positive regulation of protein phosphorylation
GO:0002376 P immune system process
GO:0005080 F protein kinase C binding
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016234 C inclusion body
GO:0016235 C aggresome
GO:0016236 P macroautophagy
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0031625 F ubiquitin protein ligase binding
GO:0042169 F SH2 domain binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043122 P regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 F ubiquitin binding
GO:0044130 P obsolete negative regulation of growth of symbiont in host
GO:0044753 C amphisome
GO:0044754 C autolysosome
GO:0046872 F metal ion binding
GO:0051291 P protein heterooligomerization
GO:0061635 P regulation of protein complex stability
GO:0070062 C extracellular exosome
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0097225 C sperm midpiece
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
6154 O_BomoMSG1553_internal:A_BomoMSG_c7604_g1_i1
120bp
 tyrosine-protein_kinase_PR2_[Bombyx_mori]
6155 O_BomoMSG15540_complete:A_BomoMSG_c25174_g8_i1
174bp
6156 O_BomoMSG15541_complete:A_BomoMSG_c25174_g8_i1
110bp
6157 O_BomoMSG15542_3prime_partial:A_BomoMSG_c25175_g1_i1
366bp
 putative_nuclease_HARBI1_isoform_X1_[Helicoverpa_armigera]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
6158 O_BomoMSG15543_internal:A_BomoMSG_c25175_g1_i2
228bp
 putative_nuclease_HARBI1_isoform_X2_[Helicoverpa_armigera]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
6159 O_BomoMSG15544_3prime_partial:A_BomoMSG_c25175_g1_i3
259bp
 putative_nuclease_HARBI1_isoform_X2_[Helicoverpa_armigera]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
6160 O_BomoMSG15545_internal:A_BomoMSG_c25176_g1_i1
188bp
 bromodomain-containing_protein_DDB_G0280777-like_[Bombyx_mori]
6161 O_BomoMSG15546_5prime_partial:A_BomoMSG_c25176_g1_i1
144bp
6162 O_BomoMSG15547_complete:A_BomoMSG_c25176_g2_i1
484bp
 roquin-1_isoform_X6_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
6163 O_BomoMSG15548_complete:A_BomoMSG_c25176_g2_i1
161bp
6164 O_BomoMSG15549_3prime_partial:A_BomoMSG_c25176_g2_i2
584bp
 roquin-1_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0001782 P B cell homeostasis
GO:0002634 P regulation of germinal center formation
GO:0002635 P negative regulation of germinal center formation
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0030889 P negative regulation of B cell proliferation
GO:0033962 P P-body assembly
GO:0035613 F RNA stem-loop binding
GO:0042098 P T cell proliferation
GO:0042129 P regulation of T cell proliferation
GO:0043029 P T cell homeostasis
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0045623 P negative regulation of T-helper cell differentiation
GO:0046007 P negative regulation of activated T cell proliferation
GO:0046872 F metal ion binding
GO:0048535 P lymph node development
GO:0048536 P spleen development
GO:0050856 P regulation of T cell receptor signaling pathway
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0061470 P T follicular helper cell differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0071347 P cellular response to interleukin-1
GO:1901224 P positive regulation of NIK/NF-kappaB signaling
6165 O_BomoMSG1554_internal:A_BomoMSG_c7608_g1_i1
116bp
 uncharacterized_protein_LOC105842098_[Bombyx_mori]
6166 O_BomoMSG15550_complete:A_BomoMSG_c25176_g2_i2
161bp
6167 O_BomoMSG15551_internal:A_BomoMSG_c25179_g1_i1
384bp
 LOW_QUALITY_PROTEIN:_JNK-interacting_protein_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005078 F MAP-kinase scaffold activity
GO:0005737 C cytoplasm
GO:0008088 P axo-dendritic transport
GO:0009967 P positive regulation of signal transduction
GO:0016192 P vesicle-mediated transport
GO:0019894 F kinesin binding
GO:0030140 C trans-Golgi network transport vesicle
GO:0043005 C neuron projection
GO:0046328 P regulation of JNK cascade
6168 O_BomoMSG15552_internal:A_BomoMSG_c25180_g1_i1
482bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6169 O_BomoMSG15553_complete:A_BomoMSG_c25180_g1_i1
106bp
6170 O_BomoMSG15554_5prime_partial:A_BomoMSG_c25180_g1_i2
272bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0046872 F metal ion binding
6171 O_BomoMSG15555_3prime_partial:A_BomoMSG_c25180_g1_i2
258bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6172 O_BomoMSG15556_complete:A_BomoMSG_c25180_g1_i2
106bp
6173 O_BomoMSG15557_3prime_partial:A_BomoMSG_c25180_g1_i3
258bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6174 O_BomoMSG15558_5prime_partial:A_BomoMSG_c25180_g1_i3
135bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0046872 F metal ion binding
6175 O_BomoMSG15559_complete:A_BomoMSG_c25180_g1_i3
112bp
6176 O_BomoMSG1555_complete:A_BomoMSG_c7610_g1_i1
399bp
 NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_10,_mitochondrial_[Bombyx_mori]
GO:0003954 F NADH dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005747 C mitochondrial respiratory chain complex I
GO:0005759 C mitochondrial matrix
GO:0005811 C lipid droplet
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0010906 P regulation of glucose metabolic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
6177 O_BomoMSG15560_3prime_partial:A_BomoMSG_c25180_g1_i4
293bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
6178 O_BomoMSG15561_5prime_partial:A_BomoMSG_c25180_g1_i4
135bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0046872 F metal ion binding
6179 O_BomoMSG15562_complete:A_BomoMSG_c25180_g1_i4
112bp
6180 O_BomoMSG15563_3prime_partial:A_BomoMSG_c25180_g1_i5
258bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
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