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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6121 O_BomoMSG1550_internal:A_BomoMSG_c7583_g1_i1
121bp
6122 O_BomoMSG15510_complete:A_BomoMSG_c25160_g1_i4
297bp
 uncharacterized_protein_LOC105841778_isoform_X1_[Bombyx_mori]
6123 O_BomoMSG15511_complete:A_BomoMSG_c25160_g1_i4
120bp
6124 O_BomoMSG15512_internal:A_BomoMSG_c25161_g1_i1
265bp
 H(+)/Cl(-)_exchange_transporter_5_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0012506 C vesicle membrane
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
6125 O_BomoMSG15513_3prime_partial:A_BomoMSG_c25161_g1_i1
99bp
6126 O_BomoMSG15514_3prime_partial:A_BomoMSG_c25161_g1_i2
328bp
 H(+)/Cl(-)_exchange_transporter_5_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0012506 C vesicle membrane
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
6127 O_BomoMSG15515_internal:A_BomoMSG_c25161_g1_i4
338bp
 H(+)/Cl(-)_exchange_transporter_5_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0012506 C vesicle membrane
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
6128 O_BomoMSG15516_3prime_partial:A_BomoMSG_c25161_g1_i5
213bp
 H(+)/Cl(-)_exchange_transporter_5_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0012506 C vesicle membrane
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
6129 O_BomoMSG15517_3prime_partial:A_BomoMSG_c25162_g1_i1
202bp
6130 O_BomoMSG15518_3prime_partial:A_BomoMSG_c25162_g1_i1
174bp
 NEDD8-conjugating_enzyme_UBE2F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006301 P postreplication repair
GO:0016874 F ligase activity
GO:0019788 F NEDD8 transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0045116 P protein neddylation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
6131 O_BomoMSG15519_complete:A_BomoMSG_c25163_g1_i1
192bp
 calcium_channel_flower_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005262 F calcium channel activity
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030285 C integral component of synaptic vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0046530 P photoreceptor cell differentiation
GO:0048488 P synaptic vesicle endocytosis
GO:0070588 P calcium ion transmembrane transport
6132 O_BomoMSG1551_internal:A_BomoMSG_c7583_g1_i1
121bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101747087_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0004175 F endopeptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005102 F signaling receptor binding
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005798 C Golgi-associated vesicle
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0007162 P negative regulation of cell adhesion
GO:0007219 P Notch signaling pathway
GO:0007220 P Notch receptor processing
GO:0007229 P integrin-mediated signaling pathway
GO:0007267 P cell-cell signaling
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0009986 C cell surface
GO:0010820 P positive regulation of T cell chemotaxis
GO:0012505 C endomembrane system
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0019901 F protein kinase binding
GO:0022617 P extracellular matrix disassembly
GO:0030307 P positive regulation of cell growth
GO:0030335 P positive regulation of cell migration
GO:0034612 P response to tumor necrosis factor
GO:0042117 P monocyte activation
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0048013 P ephrin receptor signaling pathway
GO:0051088 P obsolete PMA-inducible membrane protein ectodomain proteolysis
GO:0051089 P constitutive protein ectodomain proteolysis
GO:0070062 C extracellular exosome
GO:0097038 C perinuclear endoplasmic reticulum
GO:0097197 C tetraspanin-enriched microdomain
6133 O_BomoMSG15520_3prime_partial:A_BomoMSG_c25163_g1_i1
105bp
6134 O_BomoMSG15521_5prime_partial:A_BomoMSG_c25163_g1_i2
142bp
 calcium_channel_flower_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005262 F calcium channel activity
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030285 C integral component of synaptic vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0046530 P photoreceptor cell differentiation
GO:0048488 P synaptic vesicle endocytosis
GO:0070588 P calcium ion transmembrane transport
6135 O_BomoMSG15522_complete:A_BomoMSG_c25165_g1_i1
346bp
 zinc_finger_protein_483_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6136 O_BomoMSG15523_5prime_partial:A_BomoMSG_c25165_g1_i2
125bp
 zinc_finger_protein_483_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6137 O_BomoMSG15524_internal:A_BomoMSG_c25166_g2_i1
348bp
 pre-mRNA-splicing_factor_SYF1_[Helicoverpa_armigera]
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
6138 O_BomoMSG15525_5prime_partial:A_BomoMSG_c25166_g2_i1
115bp
6139 O_BomoMSG15526_complete:A_BomoMSG_c25168_g1_i1
372bp
 ancient_ubiquitous_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016746 F acyltransferase activity
6140 O_BomoMSG15527_complete:A_BomoMSG_c25168_g1_i1
209bp
6141 O_BomoMSG15528_3prime_partial:A_BomoMSG_c25169_g1_i1
628bp
 Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
6142 O_BomoMSG15529_5prime_partial:A_BomoMSG_c25169_g1_i1
266bp
6143 O_BomoMSG1552_internal:A_BomoMSG_c7596_g1_i1
193bp
 uncharacterized_protein_LOC110377997_[Helicoverpa_armigera]
6144 O_BomoMSG15530_internal:A_BomoMSG_c25169_g1_i2
225bp
 Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
6145 O_BomoMSG15531_5prime_partial:A_BomoMSG_c25169_g1_i2
135bp
6146 O_BomoMSG15532_complete:A_BomoMSG_c25170_g1_i1
343bp
 transcription_factor-like_protein_[Bombyx_mori]
GO:0000338 P protein deneddylation
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0008180 C COP9 signalosome
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010388 P protein deneddylation
GO:0019781 F NEDD8 activating enzyme activity
GO:0030154 P cell differentiation
GO:0036099 P female germ-line stem cell population maintenance
GO:0042802 F identical protein binding
GO:0046331 P lateral inhibition
GO:0046983 F protein dimerization activity
GO:0048140 P male germ-line cyst encapsulation
GO:0048477 P oogenesis
GO:0050821 P protein stabilization
6147 O_BomoMSG15533_3prime_partial:A_BomoMSG_c25172_g1_i1
380bp
 SUN_domain-containing_ossification_factor_isoform_X1_[Bombyx_mori]
GO:0001503 P ossification
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
6148 O_BomoMSG15534_internal:A_BomoMSG_c25172_g1_i3
260bp
 SUN_domain-containing_ossification_factor_isoform_X2_[Bombyx_mori]
GO:0001503 P ossification
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
6149 O_BomoMSG15535_internal:A_BomoMSG_c25172_g1_i4
164bp
 SUN_domain-containing_ossification_factor_isoform_X2_[Bombyx_mori]
GO:0001503 P ossification
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
6150 O_BomoMSG15536_internal:A_BomoMSG_c25172_g1_i5
322bp
 SUN_domain-containing_ossification_factor_isoform_X1_[Bombyx_mori]
GO:0001503 P ossification
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
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