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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5821 O_BomoMSG1523_5prime_partial:A_BomoMSG_c7494_g1_i1
116bp
 PREDICTED:_uncharacterized_protein_LOC106711187_[Papilio_machaon]
5822 O_BomoMSG15240_3prime_partial:A_BomoMSG_c25083_g1_i1
124bp
5823 O_BomoMSG15241_complete:A_BomoMSG_c25083_g1_i1
106bp
5824 O_BomoMSG15242_internal:A_BomoMSG_c25083_g1_i2
126bp
5825 O_BomoMSG15243_internal:A_BomoMSG_c25083_g1_i2
126bp
5826 O_BomoMSG15244_internal:A_BomoMSG_c25083_g1_i2
126bp
 eIF-2-alpha_kinase_activator_GCN1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005844 C polysome
GO:0006412 P translation
GO:0006417 P regulation of translation
GO:0008135 F translation factor activity, RNA binding
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
5827 O_BomoMSG15245_complete:A_BomoMSG_c25083_g1_i2
106bp
5828 O_BomoMSG15246_internal:A_BomoMSG_c25083_g1_i3
721bp
 eIF-2-alpha_kinase_activator_GCN1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005844 C polysome
GO:0006412 P translation
GO:0006417 P regulation of translation
GO:0008135 F translation factor activity, RNA binding
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
5829 O_BomoMSG15247_complete:A_BomoMSG_c25083_g1_i3
211bp
5830 O_BomoMSG15248_complete:A_BomoMSG_c25083_g1_i3
167bp
5831 O_BomoMSG15249_5prime_partial:A_BomoMSG_c25083_g1_i3
138bp
5832 O_BomoMSG1524_internal:A_BomoMSG_c7497_g1_i2
116bp
 ATP-dependent_DNA_helicase_PIF1-like_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010521 F telomerase inhibitor activity
GO:0016787 F hydrolase activity
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
GO:0044806 P G-quadruplex DNA unwinding
GO:0051276 P chromosome organization
GO:0051974 P negative regulation of telomerase activity
5833 O_BomoMSG15250_3prime_partial:A_BomoMSG_c25083_g1_i3
124bp
5834 O_BomoMSG15251_complete:A_BomoMSG_c25083_g1_i3
106bp
5835 O_BomoMSG15252_complete:A_BomoMSG_c25084_g1_i2
275bp
 TIP41-like_protein_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0043009 P chordate embryonic development
GO:0043066 P negative regulation of apoptotic process
5836 O_BomoMSG15253_complete:A_BomoMSG_c25085_g2_i1
205bp
 apolipoprotein_D_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0005215 F transporter activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0006006 P glucose metabolic process
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0007420 P brain development
GO:0007568 P aging
GO:0008289 F lipid binding
GO:0010642 P negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 P peripheral nervous system axon regeneration
GO:0015485 F cholesterol binding
GO:0022626 C cytosolic ribosome
GO:0030425 C dendrite
GO:0042246 P tissue regeneration
GO:0042308 P negative regulation of protein import into nucleus
GO:0042493 P response to xenobiotic stimulus
GO:0043025 C neuronal cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0048678 P response to axon injury
GO:0051895 P negative regulation of focal adhesion assembly
GO:0060588 P negative regulation of lipoprotein lipid oxidation
GO:0070062 C extracellular exosome
GO:0071638 P negative regulation of monocyte chemotactic protein-1 production
GO:1900016 P negative regulation of cytokine production involved in inflammatory response
GO:2000098 P negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 P negative regulation of T cell migration
5837 O_BomoMSG15254_complete:A_BomoMSG_c25085_g2_i2
205bp
 apolipoprotein_D_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0005215 F transporter activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0006006 P glucose metabolic process
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0007420 P brain development
GO:0007568 P aging
GO:0008289 F lipid binding
GO:0010642 P negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 P peripheral nervous system axon regeneration
GO:0015485 F cholesterol binding
GO:0022626 C cytosolic ribosome
GO:0030425 C dendrite
GO:0042246 P tissue regeneration
GO:0042308 P negative regulation of protein import into nucleus
GO:0042493 P response to xenobiotic stimulus
GO:0043025 C neuronal cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0048678 P response to axon injury
GO:0051895 P negative regulation of focal adhesion assembly
GO:0060588 P negative regulation of lipoprotein lipid oxidation
GO:0070062 C extracellular exosome
GO:0071638 P negative regulation of monocyte chemotactic protein-1 production
GO:1900016 P negative regulation of cytokine production involved in inflammatory response
GO:2000098 P negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 P negative regulation of T cell migration
5838 O_BomoMSG15255_complete:A_BomoMSG_c25085_g2_i5
205bp
 apolipoprotein_D_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0005215 F transporter activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0006006 P glucose metabolic process
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0007420 P brain development
GO:0007568 P aging
GO:0008289 F lipid binding
GO:0010642 P negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 P peripheral nervous system axon regeneration
GO:0015485 F cholesterol binding
GO:0022626 C cytosolic ribosome
GO:0030425 C dendrite
GO:0042246 P tissue regeneration
GO:0042308 P negative regulation of protein import into nucleus
GO:0042493 P response to xenobiotic stimulus
GO:0043025 C neuronal cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0048678 P response to axon injury
GO:0051895 P negative regulation of focal adhesion assembly
GO:0060588 P negative regulation of lipoprotein lipid oxidation
GO:0070062 C extracellular exosome
GO:0071638 P negative regulation of monocyte chemotactic protein-1 production
GO:1900016 P negative regulation of cytokine production involved in inflammatory response
GO:2000098 P negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 P negative regulation of T cell migration
5839 O_BomoMSG15256_internal:A_BomoMSG_c25086_g1_i1
349bp
 uncharacterized_protein_LOC101738796_[Bombyx_mori]
5840 O_BomoMSG15257_internal:A_BomoMSG_c25086_g1_i2
328bp
 uncharacterized_protein_LOC101738796_[Bombyx_mori]
5841 O_BomoMSG15258_internal:A_BomoMSG_c25086_g1_i3
581bp
 uncharacterized_protein_LOC101738796_[Bombyx_mori]
5842 O_BomoMSG15259_complete:A_BomoMSG_c25086_g1_i3
102bp
5843 O_BomoMSG1525_5prime_partial:A_BomoMSG_c7501_g1_i1
109bp
5844 O_BomoMSG15260_5prime_partial:A_BomoMSG_c25087_g1_i1
330bp
 CCR4-NOT_transcription_complex_subunit_11_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
5845 O_BomoMSG15261_complete:A_BomoMSG_c25087_g1_i2
355bp
 CCR4-NOT_transcription_complex_subunit_11_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008283 P cell population proliferation
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
5846 O_BomoMSG15262_complete:A_BomoMSG_c25087_g1_i3
476bp
 CCR4-NOT_transcription_complex_subunit_11_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008283 P cell population proliferation
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
5847 O_BomoMSG15263_complete:A_BomoMSG_c25089_g1_i1
150bp
 mimitin,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0022904 P respiratory electron transport chain
GO:0045333 P cellular respiration
GO:0061179 P negative regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0072593 P reactive oxygen species metabolic process
5848 O_BomoMSG15264_complete:A_BomoMSG_c25091_g1_i1
247bp
 UPF0454_protein_C12orf49_homolog_[Bombyx_mori]
GO:0005576 C extracellular region
5849 O_BomoMSG15265_5prime_partial:A_BomoMSG_c25091_g1_i3
240bp
 UPF0454_protein_C12orf49_homolog_[Bombyx_mori]
GO:0005576 C extracellular region
5850 O_BomoMSG15266_complete:A_BomoMSG_c25093_g1_i1
798bp
 ankyrin_repeat_domain-containing_protein_12_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
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