SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5611 O_BomoMSG15050_internal:A_BomoMSG_c25025_g1_i2
774bp
 LOW_QUALITY_PROTEIN:_partitioning_defective_3_homolog_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0002092 P positive regulation of receptor internalization
GO:0003383 P apical constriction
GO:0005080 F protein kinase C binding
GO:0005515 F protein binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0005913 C adherens junction
GO:0005923 C bicellular tight junction
GO:0005938 C cell cortex
GO:0006612 P protein targeting to membrane
GO:0007049 P cell cycle
GO:0007163 P establishment or maintenance of cell polarity
GO:0008289 F lipid binding
GO:0010801 P negative regulation of peptidyl-threonine phosphorylation
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016337 P cell-cell adhesion
GO:0022011 P myelination in peripheral nervous system
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0031643 P positive regulation of myelination
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0032970 P regulation of actin filament-based process
GO:0033269 C internode region of axon
GO:0043219 C lateral loop
GO:0043220 C Schmidt-Lanterman incisure
GO:0043234 C protein-containing complex
GO:0044319 P wound healing, spreading of cells
GO:0045177 C apical part of cell
GO:0051301 P cell division
GO:0051642 P centrosome localization
GO:0070830 P bicellular tight junction assembly
GO:0090162 P establishment of epithelial cell polarity
5612 O_BomoMSG15051_complete:A_BomoMSG_c25025_g1_i2
113bp
5613 O_BomoMSG15052_internal:A_BomoMSG_c25026_g1_i1
204bp
 GTP-binding_protein_10_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003674 F molecular_function
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0042254 P ribosome biogenesis
5614 O_BomoMSG15053_3prime_partial:A_BomoMSG_c25026_g2_i1
192bp
 GTP-binding_protein_10_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003674 F molecular_function
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0042254 P ribosome biogenesis
5615 O_BomoMSG15054_3prime_partial:A_BomoMSG_c25027_g1_i1
454bp
 nuclear_pore_complex_protein_Nup160_homolog_[Helicoverpa_armigera]
GO:0000724 P double-strand break repair via homologous recombination
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007184 P regulation of SMAD protein signal transduction
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
5616 O_BomoMSG15055_internal:A_BomoMSG_c25027_g1_i2
190bp
 nuclear_pore_complex_protein_Nup160_homolog_[Helicoverpa_armigera]
GO:0000724 P double-strand break repair via homologous recombination
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007184 P regulation of SMAD protein signal transduction
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
5617 O_BomoMSG15056_3prime_partial:A_BomoMSG_c25028_g1_i1
212bp
 Lysine-specific_demethylase_5B_[Papilio_machaon]
GO:0002457 P T cell antigen processing and presentation
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
5618 O_BomoMSG15057_3prime_partial:A_BomoMSG_c25029_g1_i1
342bp
 paired_box_protein_Pax-6-like_isoform_X1_[Helicoverpa_armigera]
GO:0000790 C chromatin
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001755 P neural crest cell migration
GO:0001764 P neuron migration
GO:0002064 P epithelial cell development
GO:0003309 P type B pancreatic cell differentiation
GO:0003310 P pancreatic A cell differentiation
GO:0003322 P pancreatic A cell development
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0010628 P positive regulation of gene expression
GO:0010975 P regulation of neuron projection development
GO:0016567 P protein ubiquitination
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0021593 P rhombomere morphogenesis
GO:0021772 P olfactory bulb development
GO:0022027 P interkinetic nuclear migration
GO:0030154 P cell differentiation
GO:0030902 P hindbrain development
GO:0032869 P cellular response to insulin stimulus
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042660 P positive regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044344 P cellular response to fibroblast growth factor stimulus
GO:0045471 P response to ethanol
GO:0045664 P regulation of neuron differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048708 P astrocyte differentiation
GO:0050767 P regulation of neurogenesis
GO:0050768 P negative regulation of neurogenesis
GO:0060041 P retina development in camera-type eye
GO:0061351 P neural precursor cell proliferation
GO:0070094 P positive regulation of glucagon secretion
GO:0071333 P cellular response to glucose stimulus
GO:0071380 P cellular response to prostaglandin E stimulus
GO:1901142 P insulin metabolic process
GO:2001224 P positive regulation of neuron migration
5619 O_BomoMSG15058_complete:A_BomoMSG_c25030_g1_i1
362bp
 serine_protease_HTRA2,_mitochondrial-like_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006044 P N-acetylglucosamine metabolic process
GO:0006048 P UDP-N-acetylglucosamine biosynthetic process
GO:0006051 P N-acetylmannosamine metabolic process
GO:0009384 F N-acylmannosamine kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019262 P N-acetylneuraminate catabolic process
GO:0045127 F N-acetylglucosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
GO:0070062 C extracellular exosome
5620 O_BomoMSG15059_5prime_partial:A_BomoMSG_c25030_g1_i4
235bp
 high_temperature_requirement_protein_A2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006044 P N-acetylglucosamine metabolic process
GO:0009384 F N-acylmannosamine kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019262 P N-acetylneuraminate catabolic process
GO:0045127 F N-acetylglucosamine kinase activity
GO:0046835 P carbohydrate phosphorylation
GO:0070062 C extracellular exosome
5621 O_BomoMSG1505_complete:A_BomoMSG_c7441_g1_i1
178bp
5622 O_BomoMSG15060_internal:A_BomoMSG_c25031_g1_i1
147bp
 pre-mRNA-splicing_factor_SYF1_[Bombyx_mori]
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
5623 O_BomoMSG15061_internal:A_BomoMSG_c25031_g1_i2
319bp
 pre-mRNA-splicing_factor_SYF1_[Bombyx_mori]
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
5624 O_BomoMSG15062_3prime_partial:A_BomoMSG_c25032_g1_i1
308bp
 guanine_nucleotide-binding_protein_subunit_beta-5_[Helicoverpa_armigera]
GO:0004871 F obsolete signal transducer activity
GO:0005829 C cytosol
GO:0005834 C heterotrimeric G-protein complex
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0031682 F G-protein gamma-subunit binding
GO:0032794 F GTPase activating protein binding
GO:0043234 C protein-containing complex
GO:0044297 C cell body
GO:0051087 F chaperone binding
GO:1901386 P negative regulation of voltage-gated calcium channel activity
5625 O_BomoMSG15063_3prime_partial:A_BomoMSG_c25032_g1_i1
158bp
5626 O_BomoMSG15064_5prime_partial:A_BomoMSG_c25032_g1_i1
124bp
5627 O_BomoMSG15065_5prime_partial:A_BomoMSG_c25034_g1_i1
305bp
 serine/threonine-protein_kinase_GA29083_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
5628 O_BomoMSG15066_complete:A_BomoMSG_c25034_g1_i1
116bp
5629 O_BomoMSG15067_complete:A_BomoMSG_c25035_g1_i1
330bp
 PREDICTED:_uncharacterized_protein_LOC106138229_[Amyelois_transitella]
5630 O_BomoMSG15068_3prime_partial:A_BomoMSG_c25036_g1_i2
406bp
 alanine--glyoxylate_aminotransferase_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
5631 O_BomoMSG15069_complete:A_BomoMSG_c25036_g1_i2
106bp
5632 O_BomoMSG1506_complete:A_BomoMSG_c7441_g1_i1
112bp
5633 O_BomoMSG15070_internal:A_BomoMSG_c25036_g1_i3
207bp
 alanine--glyoxylate_aminotransferase_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
5634 O_BomoMSG15071_complete:A_BomoMSG_c25036_g1_i3
106bp
5635 O_BomoMSG15072_5prime_partial:A_BomoMSG_c25037_g1_i1
203bp
 tRNA:m(4)X_modification_enzyme_TRM13_homolog_isoform_X3_[Bombyx_mori]
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
5636 O_BomoMSG15073_5prime_partial:A_BomoMSG_c25037_g1_i1
123bp
 uncharacterized_protein_LOC101740311_isoform_X4_[Bombyx_mori]
5637 O_BomoMSG15074_complete:A_BomoMSG_c25041_g1_i1
192bp
 cdc42_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030054 C cell junction
5638 O_BomoMSG15075_complete:A_BomoMSG_c25042_g1_i1
198bp
 transcription_factor_2B_[Danaus_plexippus_plexippus]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0018095 P protein polyglutamylation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0044822 F RNA binding
GO:0060271 P cilium assembly
GO:0060296 P regulation of cilium beat frequency involved in ciliary motility
GO:0070062 C extracellular exosome
GO:2000147 P positive regulation of cell motility
GO:2000253 P positive regulation of feeding behavior
5639 O_BomoMSG15076_5prime_partial:A_BomoMSG_c25042_g1_i2
206bp
 transcription_factor_2B_[Danaus_plexippus_plexippus]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0018095 P protein polyglutamylation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0044822 F RNA binding
GO:0060271 P cilium assembly
GO:0060296 P regulation of cilium beat frequency involved in ciliary motility
GO:0070062 C extracellular exosome
GO:2000147 P positive regulation of cell motility
GO:2000253 P positive regulation of feeding behavior
5640 O_BomoMSG15077_5prime_partial:A_BomoMSG_c25044_g1_i1
192bp
 sericin_1A_[Bombyx_mori]
GO:0005576 C extracellular region
previous next from show/29137

- SilkBase 1999-2023 -