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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5551 O_BomoMSG14998_5prime_partial:A_BomoMSG_c25010_g1_i3
134bp
5552 O_BomoMSG14999_5prime_partial:A_BomoMSG_c25010_g1_i4
120bp
 LOW_QUALITY_PROTEIN:_eIF-2-alpha_kinase_activator_GCN1_[Helicoverpa_armigera]
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005844 C polysome
GO:0006412 P translation
GO:0006417 P regulation of translation
GO:0008135 F translation factor activity, RNA binding
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
5553 O_BomoMSG1499_3prime_partial:A_BomoMSG_c7427_g1_i1
204bp
 heterogeneous_nuclear_ribonucleoprotein_H_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
5554 O_BomoMSG149_internal:A_BomoMSG_c552_g1_i1
112bp
 solute_carrier_family_12_member_9_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
5555 O_BomoMSG14_3prime_partial:A_BomoMSG_c107_g1_i1
161bp
 centrin_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007099 P centriole replication
GO:0007283 P spermatogenesis
GO:0008017 F microtubule binding
GO:0016925 P protein sumoylation
GO:0031683 F G-protein beta/gamma-subunit complex binding
GO:0032391 C photoreceptor connecting cilium
GO:0032465 P regulation of cytokinesis
GO:0032795 F heterotrimeric G-protein binding
GO:0036064 C ciliary basal body
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0070911 P global genome nucleotide-excision repair
GO:0071942 C XPC complex
5556 O_BomoMSG15000_complete:A_BomoMSG_c25011_g1_i1
120bp
5557 O_BomoMSG15001_complete:A_BomoMSG_c25013_g1_i1
355bp
 forkhead_box_protein_N3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008022 F protein C-terminus binding
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0097094 P craniofacial suture morphogenesis
5558 O_BomoMSG15002_5prime_partial:A_BomoMSG_c25013_g1_i1
160bp
5559 O_BomoMSG15003_3prime_partial:A_BomoMSG_c25013_g1_i1
141bp
5560 O_BomoMSG15004_complete:A_BomoMSG_c25013_g1_i1
127bp
5561 O_BomoMSG15005_5prime_partial:A_BomoMSG_c25013_g1_i1
114bp
5562 O_BomoMSG15006_3prime_partial:A_BomoMSG_c25013_g1_i2
146bp
 forkhead_box_protein_N3_[Bombyx_mori]
5563 O_BomoMSG15007_complete:A_BomoMSG_c25013_g1_i2
127bp
5564 O_BomoMSG15008_5prime_partial:A_BomoMSG_c25014_g1_i1
390bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000733 P obsolete DNA strand renaturation
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006259 P DNA metabolic process
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036292 P DNA rewinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0071932 P replication fork reversal
GO:1990163 F four-way junction helicase activity
5565 O_BomoMSG15009_complete:A_BomoMSG_c25014_g1_i1
137bp
 putative_zinc_finger_CCCH-type_containing_10_[Operophtera_brumata]
5566 O_BomoMSG1500_5prime_partial:A_BomoMSG_c7427_g1_i1
129bp
5567 O_BomoMSG15010_complete:A_BomoMSG_c25014_g1_i1
108bp
5568 O_BomoMSG15011_3prime_partial:A_BomoMSG_c25015_g1_i1
407bp
 protein_SPT2_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
5569 O_BomoMSG15012_5prime_partial:A_BomoMSG_c25015_g1_i1
117bp
5570 O_BomoMSG15013_complete:A_BomoMSG_c25015_g1_i1
103bp
5571 O_BomoMSG15014_5prime_partial:A_BomoMSG_c25015_g2_i2
298bp
 protein_SPT2_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
5572 O_BomoMSG15015_internal:A_BomoMSG_c25016_g1_i1
380bp
 squamous_cell_carcinoma_antigen_recognized_by_T-cells_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
5573 O_BomoMSG15016_5prime_partial:A_BomoMSG_c25016_g1_i1
116bp
5574 O_BomoMSG15017_3prime_partial:A_BomoMSG_c25016_g1_i2
830bp
 squamous_cell_carcinoma_antigen_recognized_by_T-cells_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
5575 O_BomoMSG15018_5prime_partial:A_BomoMSG_c25016_g1_i2
116bp
5576 O_BomoMSG15019_internal:A_BomoMSG_c25016_g1_i3
233bp
 squamous_cell_carcinoma_antigen_recognized_by_T-cells_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
5577 O_BomoMSG1501_internal:A_BomoMSG_c7432_g1_i1
115bp
 hypothetical_protein_M514_23336_[Trichuris_suis]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
5578 O_BomoMSG15020_5prime_partial:A_BomoMSG_c25016_g1_i3
116bp
5579 O_BomoMSG15021_3prime_partial:A_BomoMSG_c25017_g1_i1
200bp
 uncharacterized_protein_LOC101735598_[Bombyx_mori]
5580 O_BomoMSG15022_3prime_partial:A_BomoMSG_c25017_g1_i2
200bp
 uncharacterized_protein_LOC101735598_[Bombyx_mori]
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