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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5521 O_BomoMSG14970_internal:A_BomoMSG_c25000_g1_i4
188bp
 LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
5522 O_BomoMSG14971_5prime_partial:A_BomoMSG_c25003_g1_i1
279bp
 integrator_complex_subunit_6_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0015629 C actin cytoskeleton
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
5523 O_BomoMSG14972_3prime_partial:A_BomoMSG_c25004_g1_i1
583bp
 negative_elongation_factor_B_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
5524 O_BomoMSG14973_internal:A_BomoMSG_c25004_g1_i2
525bp
 negative_elongation_factor_B_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle
GO:0017053 C transcription repressor complex
GO:0032021 C NELF complex
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
5525 O_BomoMSG14974_5prime_partial:A_BomoMSG_c25005_g1_i1
279bp
 uncharacterized_protein_LOC101741636_[Bombyx_mori]
GO:0005634 C nucleus
5526 O_BomoMSG14975_complete:A_BomoMSG_c25005_g1_i1
116bp
5527 O_BomoMSG14976_5prime_partial:A_BomoMSG_c25006_g1_i1
348bp
 ribonuclease_H1_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0043137 P DNA replication, removal of RNA primer
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
5528 O_BomoMSG14977_internal:A_BomoMSG_c25007_g1_i1
261bp
 probable_RNA-binding_protein_19_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0040019 P positive regulation of embryonic development
GO:0044822 F RNA binding
5529 O_BomoMSG14978_3prime_partial:A_BomoMSG_c25007_g1_i2
884bp
 probable_RNA-binding_protein_19_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0040019 P positive regulation of embryonic development
GO:0044822 F RNA binding
5530 O_BomoMSG14979_complete:A_BomoMSG_c25007_g1_i2
108bp
5531 O_BomoMSG1497_complete:A_BomoMSG_c7398_g1_i1
290bp
 ubiquitin_domain-containing_protein_UBFD1_[Bombyx_mori]
GO:0044822 F RNA binding
5532 O_BomoMSG14980_complete:A_BomoMSG_c25007_g1_i2
100bp
5533 O_BomoMSG14981_3prime_partial:A_BomoMSG_c25008_g1_i1
209bp
 transcriptional_repressor_p66-alpha_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001842 P neural fold formation
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006306 P DNA methylation
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010172 P embryonic body morphogenesis
GO:0012501 P programmed cell death
GO:0016581 C NuRD complex
GO:0016607 C nuclear speck
GO:0021506 P anterior neuropore closure
GO:0030674 F protein-macromolecule adaptor activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5534 O_BomoMSG14982_5prime_partial:A_BomoMSG_c25008_g1_i1
153bp
5535 O_BomoMSG14983_3prime_partial:A_BomoMSG_c25008_g1_i2
209bp
 transcriptional_repressor_p66-alpha_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001842 P neural fold formation
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006306 P DNA methylation
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010172 P embryonic body morphogenesis
GO:0012501 P programmed cell death
GO:0016581 C NuRD complex
GO:0016607 C nuclear speck
GO:0021506 P anterior neuropore closure
GO:0030674 F protein-macromolecule adaptor activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5536 O_BomoMSG14984_5prime_partial:A_BomoMSG_c25008_g1_i2
153bp
5537 O_BomoMSG14985_3prime_partial:A_BomoMSG_c25008_g1_i3
188bp
 transcriptional_repressor_p66-alpha_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001842 P neural fold formation
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006306 P DNA methylation
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010172 P embryonic body morphogenesis
GO:0012501 P programmed cell death
GO:0016581 C NuRD complex
GO:0016607 C nuclear speck
GO:0021506 P anterior neuropore closure
GO:0030674 F protein-macromolecule adaptor activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
5538 O_BomoMSG14986_5prime_partial:A_BomoMSG_c25008_g1_i3
132bp
5539 O_BomoMSG14987_complete:A_BomoMSG_c25008_g1_i3
109bp
5540 O_BomoMSG14988_complete:A_BomoMSG_c25009_g1_i1
128bp
 calcitonin_gene-related_peptide-receptor_component_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0009360 C DNA polymerase III complex
GO:0016020 C membrane
GO:0044237 P cellular metabolic process
5541 O_BomoMSG14989_complete:A_BomoMSG_c25009_g1_i2
128bp
 calcitonin_gene-related_peptide-receptor_component_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0009360 C DNA polymerase III complex
GO:0016020 C membrane
GO:0044237 P cellular metabolic process
5542 O_BomoMSG1498_internal:A_BomoMSG_c7425_g1_i1
105bp
 zinc_finger_protein_596_[Bombyx_mori]
5543 O_BomoMSG14990_complete:A_BomoMSG_c25009_g1_i3
128bp
 calcitonin_gene-related_peptide-receptor_component_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0009360 C DNA polymerase III complex
GO:0016020 C membrane
GO:0044237 P cellular metabolic process
5544 O_BomoMSG14991_5prime_partial:A_BomoMSG_c25010_g1_i2
518bp
 eIF-2-alpha_kinase_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
5545 O_BomoMSG14992_complete:A_BomoMSG_c25010_g1_i2
216bp
5546 O_BomoMSG14993_complete:A_BomoMSG_c25010_g1_i2
171bp
5547 O_BomoMSG14994_5prime_partial:A_BomoMSG_c25010_g1_i2
134bp
5548 O_BomoMSG14995_5prime_partial:A_BomoMSG_c25010_g1_i3
524bp
 PREDICTED:_translational_activator_GCN1_isoform_X1_[Papilio_xuthus]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
5549 O_BomoMSG14996_complete:A_BomoMSG_c25010_g1_i3
201bp
5550 O_BomoMSG14997_complete:A_BomoMSG_c25010_g1_i3
171bp
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