SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5491 O_BomoMSG14943_complete:A_BomoMSG_c24989_g1_i1
112bp
5492 O_BomoMSG14944_complete:A_BomoMSG_c24989_g1_i1
100bp
5493 O_BomoMSG14945_3prime_partial:A_BomoMSG_c24989_g1_i2
1356bp
 protein_piccolo_[Bombyx_mori]
5494 O_BomoMSG14946_5prime_partial:A_BomoMSG_c24989_g1_i2
254bp
5495 O_BomoMSG14947_3prime_partial:A_BomoMSG_c24989_g1_i2
168bp
5496 O_BomoMSG14948_5prime_partial:A_BomoMSG_c24989_g1_i2
162bp
5497 O_BomoMSG14949_complete:A_BomoMSG_c24989_g1_i2
130bp
5498 O_BomoMSG1494_internal:A_BomoMSG_c7355_g1_i1
126bp
 synaptojanin-1_[Bombyx_mori]
5499 O_BomoMSG14950_complete:A_BomoMSG_c24989_g1_i2
112bp
5500 O_BomoMSG14951_complete:A_BomoMSG_c24989_g1_i2
103bp
5501 O_BomoMSG14952_3prime_partial:A_BomoMSG_c24989_g1_i2
102bp
5502 O_BomoMSG14953_internal:A_BomoMSG_c24989_g1_i3
280bp
 protein_piccolo_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006469 P negative regulation of protein kinase activity
GO:0006470 P protein dephosphorylation
GO:0006915 P apoptotic process
GO:0010628 P positive regulation of gene expression
GO:0010634 P positive regulation of epithelial cell migration
GO:0010811 P positive regulation of cell-substrate adhesion
GO:0016576 P histone dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0033137 P negative regulation of peptidyl-serine phosphorylation
GO:0033192 F calmodulin-dependent protein phosphatase activity
GO:0035690 P cellular response to xenobiotic stimulus
GO:0035970 P peptidyl-threonine dephosphorylation
GO:0043169 F cation binding
GO:0043234 C protein-containing complex
GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0044387 P negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050921 P positive regulation of chemotaxis
GO:0051496 P positive regulation of stress fiber assembly
GO:0051894 P positive regulation of focal adhesion assembly
GO:0097193 P intrinsic apoptotic signaling pathway
5503 O_BomoMSG14954_3prime_partial:A_BomoMSG_c24990_g1_i1
216bp
 histone-arginine_methyltransferase_CARMER_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0019919 P peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0034969 P histone arginine methylation
GO:0035241 F protein-arginine omega-N monomethyltransferase activity
GO:0035242 F protein-arginine omega-N asymmetric methyltransferase activity
GO:0042054 F histone methyltransferase activity
5504 O_BomoMSG14955_3prime_partial:A_BomoMSG_c24990_g1_i1
109bp
5505 O_BomoMSG14956_3prime_partial:A_BomoMSG_c24994_g1_i1
350bp
 xylosyltransferase_oxt_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0008375 F acetylglucosaminyltransferase activity
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030158 F protein xylosyltransferase activity
GO:0030201 P heparan sulfate proteoglycan metabolic process
GO:0030204 P chondroitin sulfate metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0042732 P D-xylose metabolic process
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
5506 O_BomoMSG14957_internal:A_BomoMSG_c24994_g1_i2
132bp
 xylosyltransferase_oxt_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0008375 F acetylglucosaminyltransferase activity
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030158 F protein xylosyltransferase activity
GO:0030201 P heparan sulfate proteoglycan metabolic process
GO:0030204 P chondroitin sulfate metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0042732 P D-xylose metabolic process
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
5507 O_BomoMSG14958_internal:A_BomoMSG_c24994_g1_i3
106bp
 xylosyltransferase_oxt_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0008375 F acetylglucosaminyltransferase activity
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030158 F protein xylosyltransferase activity
GO:0030201 P heparan sulfate proteoglycan metabolic process
GO:0030204 P chondroitin sulfate metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0042732 P D-xylose metabolic process
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
5508 O_BomoMSG14959_5prime_partial:A_BomoMSG_c24995_g1_i1
112bp
 sorting_nexin-4_[Bombyx_mori]
GO:0005154 F epidermal growth factor receptor binding
GO:0005158 F insulin receptor binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005868 C cytoplasmic dynein complex
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0031201 C SNARE complex
GO:0031901 C early endosome membrane
GO:0032456 P endocytic recycling
GO:0035091 F phosphatidylinositol binding
GO:0043234 C protein-containing complex
GO:1903595 P positive regulation of histamine secretion by mast cell
GO:1990459 F transferrin receptor binding
GO:1990460 F leptin receptor binding
5509 O_BomoMSG1495_3prime_partial:A_BomoMSG_c7356_g1_i1
187bp
 general_transcription_factor_IIF_subunit_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000991 F obsolete transcription factor activity, core RNA polymerase II binding
GO:0001096 F TFIIF-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005674 C transcription factor TFIIF complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
5510 O_BomoMSG14960_5prime_partial:A_BomoMSG_c24995_g1_i2
384bp
 sorting_nexin-4_[Bombyx_mori]
GO:0005154 F epidermal growth factor receptor binding
GO:0005158 F insulin receptor binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005868 C cytoplasmic dynein complex
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0031201 C SNARE complex
GO:0031901 C early endosome membrane
GO:0032456 P endocytic recycling
GO:0035091 F phosphatidylinositol binding
GO:0043234 C protein-containing complex
GO:1903595 P positive regulation of histamine secretion by mast cell
GO:1990459 F transferrin receptor binding
GO:1990460 F leptin receptor binding
5511 O_BomoMSG14961_complete:A_BomoMSG_c24995_g1_i2
101bp
5512 O_BomoMSG14962_5prime_partial:A_BomoMSG_c24995_g1_i3
354bp
 sorting_nexin-4_[Bombyx_mori]
GO:0005154 F epidermal growth factor receptor binding
GO:0005158 F insulin receptor binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005868 C cytoplasmic dynein complex
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0031201 C SNARE complex
GO:0031901 C early endosome membrane
GO:0032456 P endocytic recycling
GO:0035091 F phosphatidylinositol binding
GO:0043234 C protein-containing complex
GO:1903595 P positive regulation of histamine secretion by mast cell
GO:1990459 F transferrin receptor binding
GO:1990460 F leptin receptor binding
5513 O_BomoMSG14963_complete:A_BomoMSG_c24995_g1_i3
101bp
5514 O_BomoMSG14964_5prime_partial:A_BomoMSG_c24998_g1_i1
106bp
 AP-3_complex_subunit_delta_[Bombyx_mori]
5515 O_BomoMSG14965_internal:A_BomoMSG_c24998_g2_i1
148bp
 AP-3_complex_subunit_delta_[Bombyx_mori]
5516 O_BomoMSG14966_internal:A_BomoMSG_c24998_g2_i1
147bp
5517 O_BomoMSG14967_internal:A_BomoMSG_c25000_g1_i1
417bp
 LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
5518 O_BomoMSG14968_internal:A_BomoMSG_c25000_g1_i2
289bp
 LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
5519 O_BomoMSG14969_internal:A_BomoMSG_c25000_g1_i3
264bp
 LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
5520 O_BomoMSG1496_complete:A_BomoMSG_c7356_g1_i2
263bp
 general_transcription_factor_IIF_subunit_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000991 F obsolete transcription factor activity, core RNA polymerase II binding
GO:0001096 F TFIIF-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005674 C transcription factor TFIIF complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
previous next from show/29137

- SilkBase 1999-2023 -