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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5461 O_BomoMSG14916_5prime_partial:A_BomoMSG_c24981_g1_i4
260bp
 hypothetical_protein_T05_7822_[Trichinella_murrelli]
5462 O_BomoMSG14917_5prime_partial:A_BomoMSG_c24982_g2_i1
329bp
 cohesin_subunit_SA-2_isoform_X1_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0019827 P stem cell population maintenance
GO:0032876 P negative regulation of DNA endoreduplication
GO:0045111 C intermediate filament cytoskeleton
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
5463 O_BomoMSG14918_3prime_partial:A_BomoMSG_c24982_g2_i1
326bp
5464 O_BomoMSG14919_complete:A_BomoMSG_c24982_g2_i1
127bp
5465 O_BomoMSG1491_5prime_partial:A_BomoMSG_c7318_g1_i1
108bp
5466 O_BomoMSG14920_5prime_partial:A_BomoMSG_c24983_g1_i2
187bp
 reverse_transcriptase-like_protein_-_silkworm
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5467 O_BomoMSG14921_5prime_partial:A_BomoMSG_c24983_g2_i1
215bp
 reverse_transcriptase-like_protein_-_silkworm
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5468 O_BomoMSG14922_3prime_partial:A_BomoMSG_c24983_g2_i1
152bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5469 O_BomoMSG14923_internal:A_BomoMSG_c24984_g1_i6
100bp
5470 O_BomoMSG14924_complete:A_BomoMSG_c24985_g1_i1
431bp
 uncharacterized_protein_LOC101737620_isoform_X3_[Bombyx_mori]
5471 O_BomoMSG14925_complete:A_BomoMSG_c24985_g1_i1
125bp
5472 O_BomoMSG14926_internal:A_BomoMSG_c24985_g1_i2
890bp
 uncharacterized_protein_LOC101737620_isoform_X3_[Bombyx_mori]
5473 O_BomoMSG14927_complete:A_BomoMSG_c24985_g1_i2
125bp
5474 O_BomoMSG14928_complete:A_BomoMSG_c24985_g1_i2
101bp
5475 O_BomoMSG14929_3prime_partial:A_BomoMSG_c24985_g1_i3
905bp
 uncharacterized_protein_LOC101737620_isoform_X3_[Bombyx_mori]
5476 O_BomoMSG1492_complete:A_BomoMSG_c7325_g1_i1
435bp
 abhydrolase_domain-containing_protein_2_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0022416 P chaeta development
GO:0035220 P wing disc development
GO:0052689 F carboxylic ester hydrolase activity
5477 O_BomoMSG14930_complete:A_BomoMSG_c24985_g1_i3
125bp
5478 O_BomoMSG14931_complete:A_BomoMSG_c24985_g1_i3
101bp
5479 O_BomoMSG14932_internal:A_BomoMSG_c24985_g1_i4
363bp
 uncharacterized_protein_LOC101737620_isoform_X3_[Bombyx_mori]
5480 O_BomoMSG14933_3prime_partial:A_BomoMSG_c24985_g1_i5
157bp
 uncharacterized_protein_LOC101737620_isoform_X2_[Bombyx_mori]
5481 O_BomoMSG14934_complete:A_BomoMSG_c24986_g1_i1
162bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_gamma_isoform-like_isoform_X2_[Amyelois_transitella]
GO:0000159 C protein phosphatase type 2A complex
GO:0005634 C nucleus
GO:0007165 P signal transduction
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
5482 O_BomoMSG14935_complete:A_BomoMSG_c24986_g1_i1
125bp
5483 O_BomoMSG14936_complete:A_BomoMSG_c24986_g1_i2
552bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_gamma_isoform-like_isoform_X2_[Amyelois_transitella]
GO:0000159 C protein phosphatase type 2A complex
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006470 P protein dephosphorylation
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
5484 O_BomoMSG14937_complete:A_BomoMSG_c24986_g1_i2
122bp
 serine/threonine_protein_phosphatase_2A_[Culex_quinquefasciatus]
5485 O_BomoMSG14938_3prime_partial:A_BomoMSG_c24989_g1_i1
1206bp
 protein_piccolo_[Bombyx_mori]
5486 O_BomoMSG14939_5prime_partial:A_BomoMSG_c24989_g1_i1
254bp
5487 O_BomoMSG1493_internal:A_BomoMSG_c7346_g1_i1
107bp
 latrophilin_Cirl-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
5488 O_BomoMSG14940_3prime_partial:A_BomoMSG_c24989_g1_i1
168bp
5489 O_BomoMSG14941_5prime_partial:A_BomoMSG_c24989_g1_i1
162bp
5490 O_BomoMSG14942_complete:A_BomoMSG_c24989_g1_i1
130bp
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