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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5371 O_BomoMSG14835_internal:A_BomoMSG_c24951_g1_i2
233bp
 verprolin_isoform_X3_[Bombyx_mori]
GO:0000976 F transcription cis-regulatory region binding
GO:0001105 F transcription coactivator activity
GO:0001764 P neuron migration
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0003779 F actin binding
GO:0003785 F actin monomer binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0010735 P positive regulation of transcription via serum response element binding
GO:0030036 P actin cytoskeleton organization
GO:0030900 P forebrain development
GO:0031175 P neuron projection development
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043522 F leucine zipper domain binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051145 P smooth muscle cell differentiation
GO:2001234 P negative regulation of apoptotic signaling pathway
5372 O_BomoMSG14836_internal:A_BomoMSG_c24951_g1_i3
414bp
 verprolin_isoform_X2_[Bombyx_mori]
GO:0001105 F transcription coactivator activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0045844 P positive regulation of striated muscle tissue development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051145 P smooth muscle cell differentiation
5373 O_BomoMSG14837_3prime_partial:A_BomoMSG_c24952_g1_i1
381bp
 phosphatidylserine_synthase_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006659 P phosphatidylserine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
5374 O_BomoMSG14838_complete:A_BomoMSG_c24952_g1_i1
122bp
 hypothetical_protein,_variant_1_[Aphanomyces_astaci]
5375 O_BomoMSG14839_internal:A_BomoMSG_c24953_g1_i1
139bp
 PREDICTED:_uncharacterized_protein_LOC106708887_[Papilio_machaon]
5376 O_BomoMSG1483_internal:A_BomoMSG_c7300_g1_i1
122bp
5377 O_BomoMSG14840_5prime_partial:A_BomoMSG_c24953_g1_i2
351bp
 PREDICTED:_uncharacterized_protein_LOC106708887_[Papilio_machaon]
5378 O_BomoMSG14841_5prime_partial:A_BomoMSG_c24953_g1_i2
120bp
5379 O_BomoMSG14842_complete:A_BomoMSG_c24954_g1_i1
117bp
 PREDICTED:_uncharacterized_protein_LOC106125042_[Papilio_xuthus]
5380 O_BomoMSG14843_internal:A_BomoMSG_c24955_g1_i1
692bp
 protein_Gawky_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000932 C P-body
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0031047 P gene silencing by RNA
GO:0032880 P regulation of protein localization
GO:0035195 P gene silencing by miRNA
GO:0045475 P locomotor rhythm
5381 O_BomoMSG14844_3prime_partial:A_BomoMSG_c24956_g1_i1
151bp
 pseudouridylate_synthase_7_homolog_[Bombyx_mori]
GO:0000455 P enzyme-directed rRNA pseudouridine synthesis
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008380 P RNA splicing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0031120 P snRNA pseudouridine synthesis
GO:0042254 P ribosome biogenesis
GO:1990481 P mRNA pseudouridine synthesis
5382 O_BomoMSG14845_complete:A_BomoMSG_c24956_g1_i1
113bp
5383 O_BomoMSG14846_internal:A_BomoMSG_c24956_g1_i2
281bp
 pseudouridylate_synthase_7_homolog_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0019899 F enzyme binding
GO:0044822 F RNA binding
5384 O_BomoMSG14847_complete:A_BomoMSG_c24956_g1_i2
179bp
5385 O_BomoMSG14848_3prime_partial:A_BomoMSG_c24956_g1_i3
314bp
 pseudouridylate_synthase_7_homolog_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0019899 F enzyme binding
GO:0044822 F RNA binding
5386 O_BomoMSG14849_complete:A_BomoMSG_c24956_g1_i3
179bp
5387 O_BomoMSG1484_internal:A_BomoMSG_c7300_g1_i1
122bp
 frizzled-10,_partial_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0009986 C cell surface
GO:0014036 P neural crest cell fate specification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016324 C apical plasma membrane
GO:0032880 P regulation of protein localization
GO:0042813 F Wnt-activated receptor activity
5388 O_BomoMSG14850_complete:A_BomoMSG_c24957_g1_i1
496bp
 cytochrome_P450_4C1_isoform_X1_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070330 F aromatase activity
5389 O_BomoMSG14851_complete:A_BomoMSG_c24957_g1_i1
158bp
5390 O_BomoMSG14852_complete:A_BomoMSG_c24957_g1_i3
496bp
 cytochrome_P450_4C1_isoform_X1_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070330 F aromatase activity
5391 O_BomoMSG14853_complete:A_BomoMSG_c24957_g1_i3
195bp
5392 O_BomoMSG14854_internal:A_BomoMSG_c24958_g1_i1
209bp
 period_isoform_X3_[Bombyx_mori]
5393 O_BomoMSG14855_internal:A_BomoMSG_c24958_g1_i2
543bp
 period_isoform_X5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
5394 O_BomoMSG14856_internal:A_BomoMSG_c24958_g1_i3
223bp
 period_isoform_X5_[Bombyx_mori]
5395 O_BomoMSG14857_5prime_partial:A_BomoMSG_c24960_g2_i1
462bp
 ADP-ribosylation_factor-like_protein_13B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001947 P heart looping
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007224 P smoothened signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007368 P determination of left/right symmetry
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0021532 P neural tube patterning
GO:0021830 P interneuron migration from the subpallium to the cortex
GO:0021943 P formation of radial glial scaffolds
GO:0031514 C motile cilium
GO:0035058 P non-motile cilium assembly
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0060170 C ciliary membrane
GO:0070986 P left/right axis specification
GO:0072372 C cilium
5396 O_BomoMSG14858_complete:A_BomoMSG_c24960_g2_i2
487bp
 ADP-ribosylation_factor-like_protein_13B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001947 P heart looping
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007224 P smoothened signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007368 P determination of left/right symmetry
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0021532 P neural tube patterning
GO:0021830 P interneuron migration from the subpallium to the cortex
GO:0021943 P formation of radial glial scaffolds
GO:0031514 C motile cilium
GO:0035058 P non-motile cilium assembly
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0060170 C ciliary membrane
GO:0070986 P left/right axis specification
GO:0072372 C cilium
5397 O_BomoMSG14859_5prime_partial:A_BomoMSG_c24961_g1_i3
155bp
 U4/U6.U5_tri-snRNP-associated_protein_1_isoform_X2_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000481 P maturation of 5S rRNA
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0007050 P regulation of cell cycle
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0045585 P positive regulation of cytotoxic T cell differentiation
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071013 C catalytic step 2 spliceosome
GO:0097193 P intrinsic apoptotic signaling pathway
5398 O_BomoMSG1485_internal:A_BomoMSG_c7300_g1_i1
122bp
5399 O_BomoMSG14860_5prime_partial:A_BomoMSG_c24961_g1_i3
151bp
5400 O_BomoMSG14861_internal:A_BomoMSG_c24962_g1_i1
171bp
 PX_domain-containing_protein_kinase-like_protein_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003779 F actin binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006954 P inflammatory response
GO:0008022 F protein C-terminus binding
GO:0016020 C membrane
GO:0032780 P negative regulation of ATP-dependent activity
GO:0035091 F phosphatidylinositol binding
GO:0042391 P regulation of membrane potential
GO:0043234 C protein-containing complex
GO:0043271 P negative regulation of ion transport
GO:0050804 P modulation of chemical synaptic transmission
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