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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4891 O_BomoMSG14402_complete:A_BomoMSG_c24781_g1_i1
825bp
 vacuolar_protein_sorting-associated_protein_35_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006624 P vacuolar protein processing
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030904 C retromer complex
GO:0031647 P regulation of protein stability
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045056 P transcytosis
GO:0061357 P positive regulation of Wnt protein secretion
GO:0070062 C extracellular exosome
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0097422 C tubular endosome
GO:0097481 C postsynaptic density
GO:1902823 P negative regulation of late endosome to lysosome transport
GO:1990126 P endocytic recycling
4892 O_BomoMSG14403_complete:A_BomoMSG_c24781_g1_i1
140bp
4893 O_BomoMSG14404_complete:A_BomoMSG_c24781_g1_i1
129bp
4894 O_BomoMSG14405_5prime_partial:A_BomoMSG_c24781_g1_i2
166bp
 vacuolar_protein_sorting-associated_protein_35_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006624 P vacuolar protein processing
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030904 C retromer complex
GO:0031647 P regulation of protein stability
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045056 P transcytosis
GO:0061357 P positive regulation of Wnt protein secretion
GO:0070062 C extracellular exosome
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0097422 C tubular endosome
GO:0097481 C postsynaptic density
GO:1902823 P negative regulation of late endosome to lysosome transport
GO:1990126 P endocytic recycling
4895 O_BomoMSG14406_3prime_partial:A_BomoMSG_c24781_g1_i2
111bp
4896 O_BomoMSG14407_complete:A_BomoMSG_c24781_g1_i3
809bp
 vacuolar_protein_sorting-associated_protein_35_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006624 P vacuolar protein processing
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030904 C retromer complex
GO:0031647 P regulation of protein stability
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045056 P transcytosis
GO:0061357 P positive regulation of Wnt protein secretion
GO:0070062 C extracellular exosome
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0097422 C tubular endosome
GO:0097481 C postsynaptic density
GO:1902823 P negative regulation of late endosome to lysosome transport
GO:1990126 P endocytic recycling
4897 O_BomoMSG14408_complete:A_BomoMSG_c24781_g1_i3
140bp
4898 O_BomoMSG14409_complete:A_BomoMSG_c24781_g1_i3
129bp
4899 O_BomoMSG1440_5prime_partial:A_BomoMSG_c7030_g1_i1
111bp
4900 O_BomoMSG14410_internal:A_BomoMSG_c24782_g1_i1
402bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
4901 O_BomoMSG14411_5prime_partial:A_BomoMSG_c24782_g1_i1
104bp
4902 O_BomoMSG14412_internal:A_BomoMSG_c24782_g1_i2
469bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
4903 O_BomoMSG14413_5prime_partial:A_BomoMSG_c24782_g1_i2
104bp
4904 O_BomoMSG14414_internal:A_BomoMSG_c24782_g1_i3
792bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
4905 O_BomoMSG14415_5prime_partial:A_BomoMSG_c24782_g1_i3
104bp
4906 O_BomoMSG14416_5prime_partial:A_BomoMSG_c24783_g1_i1
757bp
 rho_GTPase-activating_protein_39_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
4907 O_BomoMSG14417_complete:A_BomoMSG_c24783_g1_i1
127bp
4908 O_BomoMSG14418_complete:A_BomoMSG_c24783_g1_i1
105bp
4909 O_BomoMSG14419_5prime_partial:A_BomoMSG_c24783_g1_i2
333bp
 rho_GTPase-activating_protein_39_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
4910 O_BomoMSG1441_internal:A_BomoMSG_c7034_g1_i1
114bp
 intersectin-1_isoform_X2_[Bombyx_mori]
4911 O_BomoMSG14420_5prime_partial:A_BomoMSG_c24783_g1_i2
142bp
4912 O_BomoMSG14421_5prime_partial:A_BomoMSG_c24783_g1_i3
307bp
 rho_GTPase-activating_protein_39_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
4913 O_BomoMSG14422_5prime_partial:A_BomoMSG_c24783_g1_i3
116bp
4914 O_BomoMSG14423_complete:A_BomoMSG_c24784_g1_i1
479bp
 serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_gamma_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0001782 P B cell homeostasis
GO:0002759 P regulation of antimicrobial humoral response
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005819 C spindle
GO:0030865 P cortical cytoskeleton organization
GO:0032147 P activation of protein kinase activity
GO:0043029 P T cell homeostasis
GO:0045579 P positive regulation of B cell differentiation
GO:0046872 F metal ion binding
GO:0048536 P spleen development
GO:0050864 P regulation of B cell activation
GO:0051900 P regulation of mitochondrial depolarization
4915 O_BomoMSG14424_complete:A_BomoMSG_c24788_g1_i1
145bp
 uncharacterized_protein_LOC101741973_[Bombyx_mori]
4916 O_BomoMSG14425_complete:A_BomoMSG_c24789_g1_i1
497bp
 scavenger_receptor_class_B_member_1-like_isoform_X2_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001618 F virus receptor activity
GO:0001786 F phosphatidylserine binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006702 P androgen biosynthetic process
GO:0006707 P cholesterol catabolic process
GO:0006869 P lipid transport
GO:0006898 P receptor-mediated endocytosis
GO:0006910 P phagocytosis, recognition
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0030666 C endocytic vesicle membrane
GO:0031528 C microvillus membrane
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042060 P wound healing
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0046718 P viral entry into host cell
GO:0050764 P regulation of phagocytosis
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
4917 O_BomoMSG14426_complete:A_BomoMSG_c24789_g1_i1
113bp
4918 O_BomoMSG14427_complete:A_BomoMSG_c24789_g1_i3
464bp
 scavenger_receptor_class_B_member_1-like_isoform_X1_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006707 P cholesterol catabolic process
GO:0006898 P receptor-mediated endocytosis
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
4919 O_BomoMSG14428_complete:A_BomoMSG_c24789_g1_i3
113bp
4920 O_BomoMSG14429_complete:A_BomoMSG_c24789_g1_i4
497bp
 scavenger_receptor_class_B_member_1-like_isoform_X2_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001618 F virus receptor activity
GO:0001786 F phosphatidylserine binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006702 P androgen biosynthetic process
GO:0006707 P cholesterol catabolic process
GO:0006869 P lipid transport
GO:0006898 P receptor-mediated endocytosis
GO:0006910 P phagocytosis, recognition
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0030666 C endocytic vesicle membrane
GO:0031528 C microvillus membrane
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042060 P wound healing
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0046718 P viral entry into host cell
GO:0050764 P regulation of phagocytosis
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
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