SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4921 O_BomoMSG1442_internal:A_BomoMSG_c7036_g1_i1
243bp
 uncharacterized_protein_LOC101745112_[Bombyx_mori]
4922 O_BomoMSG14430_complete:A_BomoMSG_c24789_g1_i4
113bp
4923 O_BomoMSG14431_complete:A_BomoMSG_c24789_g1_i5
464bp
 scavenger_receptor_class_B_member_1-like_isoform_X1_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006707 P cholesterol catabolic process
GO:0006898 P receptor-mediated endocytosis
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
4924 O_BomoMSG14432_complete:A_BomoMSG_c24789_g1_i5
113bp
4925 O_BomoMSG14433_internal:A_BomoMSG_c24791_g1_i1
380bp
 lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032452 F histone demethylase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072718 P response to cisplatin
GO:0098869 P cellular oxidant detoxification
4926 O_BomoMSG14434_5prime_partial:A_BomoMSG_c24791_g1_i1
150bp
4927 O_BomoMSG14435_5prime_partial:A_BomoMSG_c24791_g1_i1
111bp
4928 O_BomoMSG14436_complete:A_BomoMSG_c24794_g1_i1
193bp
 uncharacterized_protein_LOC101745170_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0046778 P modification by virus of host mRNA processing
GO:0046872 F metal ion binding
4929 O_BomoMSG14437_5prime_partial:A_BomoMSG_c24794_g1_i1
114bp
4930 O_BomoMSG14438_complete:A_BomoMSG_c24794_g1_i2
118bp
 uncharacterized_protein_LOC101745170_[Bombyx_mori]
4931 O_BomoMSG14439_5prime_partial:A_BomoMSG_c24794_g1_i2
114bp
4932 O_BomoMSG1443_complete:A_BomoMSG_c7036_g1_i1
105bp
4933 O_BomoMSG14440_5prime_partial:A_BomoMSG_c24798_g1_i1
465bp
 spindle_assembly_abnormal_protein_6_homolog_isoform_X2_[Bombyx_mori]
GO:0000280 P nuclear division
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007052 P mitotic spindle organization
GO:0007099 P centriole replication
GO:0007283 P spermatogenesis
GO:0040016 P embryonic cleavage
GO:0051298 P centrosome duplication
GO:0098536 C deuterosome
4934 O_BomoMSG14441_5prime_partial:A_BomoMSG_c24800_g1_i2
151bp
 protein_piccolo_[Bombyx_mori]
4935 O_BomoMSG14442_5prime_partial:A_BomoMSG_c24800_g1_i2
116bp
4936 O_BomoMSG14443_internal:A_BomoMSG_c24801_g1_i1
130bp
 F-box/LRR-repeat_protein_14_[Bombyx_mori]
4937 O_BomoMSG14444_complete:A_BomoMSG_c24801_g2_i1
204bp
4938 O_BomoMSG14445_complete:A_BomoMSG_c24801_g2_i1
125bp
 triose-phosphate_transporter-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034219 P carbohydrate transmembrane transport
4939 O_BomoMSG14446_complete:A_BomoMSG_c24801_g2_i1
112bp
 triose-phosphate_transporter-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034219 P carbohydrate transmembrane transport
4940 O_BomoMSG14447_5prime_partial:A_BomoMSG_c24801_g3_i1
162bp
 F-box/LRR-repeat_protein_14_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
4941 O_BomoMSG14448_complete:A_BomoMSG_c24801_g2_i2
312bp
 triose-phosphate_transporter-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034219 P carbohydrate transmembrane transport
4942 O_BomoMSG14449_complete:A_BomoMSG_c24801_g2_i2
226bp
4943 O_BomoMSG1444_internal:A_BomoMSG_c7037_g1_i1
149bp
 microprocessor_complex_subunit_DGCR8_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004525 F ribonuclease III activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0015630 C microtubule cytoskeleton
GO:0020037 F heme binding
GO:0031053 P primary miRNA processing
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0070877 C microprocessor complex
GO:0070878 F primary miRNA binding
GO:0072091 P regulation of stem cell proliferation
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4944 O_BomoMSG14450_complete:A_BomoMSG_c24801_g2_i2
181bp
4945 O_BomoMSG14451_complete:A_BomoMSG_c24801_g2_i3
206bp
4946 O_BomoMSG14452_complete:A_BomoMSG_c24801_g2_i3
189bp
4947 O_BomoMSG14453_complete:A_BomoMSG_c24801_g2_i3
125bp
 triose-phosphate_transporter-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034219 P carbohydrate transmembrane transport
4948 O_BomoMSG14454_complete:A_BomoMSG_c24801_g2_i3
112bp
 triose-phosphate_transporter-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034219 P carbohydrate transmembrane transport
4949 O_BomoMSG14455_complete:A_BomoMSG_c24801_g2_i4
312bp
 triose-phosphate_transporter-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034219 P carbohydrate transmembrane transport
4950 O_BomoMSG14456_complete:A_BomoMSG_c24801_g2_i4
226bp
previous next from show/29137

- SilkBase 1999-2023 -