Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
4861	O_BomoMSG14376_5prime_partial:A_BomoMSG_c24768_g2_i1 105bp	Bomo_Chr9	tubulin-specific_chaperone_D_[Bombyx_mori]	GO:0005096 F GTPase activator activity GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005874 C microtubule GO:0005886 C plasma membrane GO:0005912 C adherens junction GO:0005923 C bicellular tight junction GO:0006457 P protein folding GO:0007021 P tubulin complex assembly GO:0007023 P post-chaperonin tubulin folding pathway GO:0010812 P negative regulation of cell-substrate adhesion GO:0016020 C membrane GO:0016328 C lateral plasma membrane GO:0030054 C cell junction GO:0031115 P negative regulation of microtubule polymerization GO:0034333 P adherens junction assembly GO:0043547 P positive regulation of GTPase activity GO:0048487 F beta-tubulin binding GO:0051087 F chaperone binding GO:0070830 P bicellular tight junction assembly
4862	O_BomoMSG14377_complete:A_BomoMSG_c24769_g1_i1 1097bp	Bomo_Chr4	polycomb_group_protein_Psc_[Bombyx_mori]	GO:0001047 F core promoter sequence-specific DNA binding GO:0003677 F DNA binding GO:0005634 C nucleus GO:0005704 C polytene chromosome band GO:0005725 C intercalary heterochromatin GO:0006338 P chromatin remodeling GO:0006342 P heterochromatin assembly GO:0007275 P multicellular organism development GO:0007411 P axon guidance GO:0007419 P ventral cord development GO:0008270 F zinc ion binding GO:0031519 C PcG protein complex GO:0035102 C PRC1 complex GO:0035186 P syncytial blastoderm mitotic cell cycle GO:0046872 F metal ion binding
4863	O_BomoMSG14378_complete:A_BomoMSG_c24769_g1_i1 111bp	Bomo_Chr4
4864	O_BomoMSG14379_complete:A_BomoMSG_c24769_g1_i2 1097bp	Bomo_Chr4	polycomb_group_protein_Psc_[Bombyx_mori]	GO:0001047 F core promoter sequence-specific DNA binding GO:0003677 F DNA binding GO:0005634 C nucleus GO:0005704 C polytene chromosome band GO:0005725 C intercalary heterochromatin GO:0006338 P chromatin remodeling GO:0006342 P heterochromatin assembly GO:0007275 P multicellular organism development GO:0007411 P axon guidance GO:0007419 P ventral cord development GO:0008270 F zinc ion binding GO:0031519 C PcG protein complex GO:0035102 C PRC1 complex GO:0035186 P syncytial blastoderm mitotic cell cycle GO:0046872 F metal ion binding
4865	O_BomoMSG1437_5prime_partial:A_BomoMSG_c6994_g1_i1 165bp	Bomo_Chr3	F-box/LRR-repeat_protein_15_[Bombyx_mori]	GO:0000086 P G2/M transition of mitotic cell cycle GO:0004842 F ubiquitin-protein transferase activity GO:0005737 C cytoplasm GO:0009953 P dorsal/ventral pattern formation GO:0016567 P protein ubiquitination GO:0019005 C SCF ubiquitin ligase complex GO:0030282 P bone mineralization GO:0030513 P positive regulation of BMP signaling pathway GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
4866	O_BomoMSG14380_complete:A_BomoMSG_c24769_g1_i2 111bp	Bomo_Chr4
4867	O_BomoMSG14381_5prime_partial:A_BomoMSG_c24772_g1_i1 298bp	Bomo_Chr5	PREDICTED:_SCAN_domain-containing_protein_3-like_[Amyelois_transitella]	GO:0003676 F nucleic acid binding GO:0005622 C intracellular anatomical structure GO:0006355 P regulation of transcription, DNA-templated GO:0015074 P DNA integration
4868	O_BomoMSG14382_5prime_partial:A_BomoMSG_c24772_g1_i2 103bp	Bomo_Chr5
4869	O_BomoMSG14383_complete:A_BomoMSG_c24773_g1_i2 340bp	Bomo_Chr18	nucleic_acid_dioxygenase_ALKBH1_isoform_X1_[Bombyx_mori]	GO:0001701 P in utero embryonic development GO:0001764 P neuron migration GO:0001890 P placenta development GO:0003824 F catalytic activity GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0005634 C nucleus GO:0005719 C euchromatin GO:0005739 C mitochondrion GO:0006281 P DNA repair GO:0006307 P DNA dealkylation involved in DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0008152 P metabolic process GO:0008198 F ferrous iron binding GO:0010468 P regulation of gene expression GO:0016491 F oxidoreductase activity GO:0016829 F lyase activity GO:0030154 P cell differentiation GO:0031175 P neuron projection development GO:0042056 F chemoattractant activity GO:0042245 P RNA repair GO:0043524 P negative regulation of neuron apoptotic process GO:0046872 F metal ion binding GO:0048589 P developmental growth GO:0050918 P positive chemotaxis GO:0051213 F dioxygenase activity GO:0055114 P obsolete oxidation-reduction process GO:0070579 F methylcytosine dioxygenase activity GO:0070989 P oxidative demethylation GO:0080111 P DNA demethylation
4870	O_BomoMSG14384_5prime_partial:A_BomoMSG_c24775_g1_i1 268bp	Bomo_Chr11	LOW_QUALITY_PROTEIN:_histone_deacetylase_Rpd3_[Bombyx_mori]	GO:0000118 C histone deacetylase complex GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000785 C chromatin GO:0003714 F transcription corepressor activity GO:0004407 F histone deacetylase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005700 C polytene chromosome GO:0005705 C polytene chromosome interband GO:0005737 C cytoplasm GO:0006099 P tricarboxylic acid cycle GO:0006342 P heterochromatin assembly GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0007275 P multicellular organism development GO:0007350 P blastoderm segmentation GO:0007517 P muscle organ development GO:0008134 F transcription factor binding GO:0008340 P determination of adult lifespan GO:0016458 P obsolete gene silencing GO:0016568 P chromatin organization GO:0016575 P histone deacetylation GO:0016580 C Sin3 complex GO:0016581 C NuRD complex GO:0016787 F hydrolase activity GO:0017053 C transcription repressor complex GO:0022008 P neurogenesis GO:0022904 P respiratory electron transport chain GO:0031523 C Myb complex GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific) GO:0035065 P regulation of histone acetylation GO:0035098 C ESC/E(Z) complex GO:0045879 P negative regulation of smoothened signaling pathway GO:0045892 P negative regulation of transcription, DNA-templated GO:0048477 P oogenesis GO:0048813 P dendrite morphogenesis GO:0050771 P negative regulation of axonogenesis GO:0070822 C Sin3-type complex GO:0070932 P histone H3 deacetylation GO:0070983 P dendrite guidance GO:2001229 P negative regulation of response to gamma radiation
4871	O_BomoMSG14385_complete:A_BomoMSG_c24776_g1_i1 457bp	Bomo_Chr9	alkylglycerol_monooxygenase_[Bombyx_mori]	GO:0005506 F iron ion binding GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006633 P fatty acid biosynthetic process GO:0006643 P membrane lipid metabolic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016491 F oxidoreductase activity GO:0046485 P ether lipid metabolic process GO:0050479 F glyceryl-ether monooxygenase activity GO:0055114 P obsolete oxidation-reduction process
4872	O_BomoMSG14386_5prime_partial:A_BomoMSG_c24776_g1_i3 158bp	Bomo_Chr9	alkylglycerol_monooxygenase_[Bombyx_mori]	GO:0005506 F iron ion binding GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006633 P fatty acid biosynthetic process GO:0006643 P membrane lipid metabolic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016491 F oxidoreductase activity GO:0046485 P ether lipid metabolic process GO:0050479 F glyceryl-ether monooxygenase activity GO:0055114 P obsolete oxidation-reduction process
4873	O_BomoMSG14387_5prime_partial:A_BomoMSG_c24777_g1_i1 267bp	Bomo_Chr5	ubiquitin-like_modifier-activating_enzyme_5_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0005524 F ATP binding GO:0008152 P metabolic process GO:0008641 F ubiquitin-like modifier activating enzyme activity GO:0046872 F metal ion binding
4874	O_BomoMSG14388_complete:A_BomoMSG_c24777_g1_i1 153bp	Bomo_Chr5
4875	O_BomoMSG14389_complete:A_BomoMSG_c24777_g1_i1 115bp	Bomo_Chr5
4876	O_BomoMSG1438_5prime_partial:A_BomoMSG_c7026_g1_i1 107bp	Bomo_Chr27
4877	O_BomoMSG14390_3prime_partial:A_BomoMSG_c24777_g1_i2 152bp	Bomo_Chr5
4878	O_BomoMSG14391_5prime_partial:A_BomoMSG_c24777_g1_i2 130bp	Bomo_Chr5	ubiquitin-like_modifier-activating_enzyme_5_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0005524 F ATP binding GO:0008152 P metabolic process GO:0008641 F ubiquitin-like modifier activating enzyme activity GO:0046872 F metal ion binding
4879	O_BomoMSG14392_complete:A_BomoMSG_c24777_g1_i2 115bp	Bomo_Chr5
4880	O_BomoMSG14393_5prime_partial:A_BomoMSG_c24777_g1_i2 101bp	Bomo_Chr5
4881	O_BomoMSG14394_complete:A_BomoMSG_c24777_g1_i4 394bp	Bomo_Chr5	ubiquitin-like_modifier-activating_enzyme_5_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0005524 F ATP binding GO:0008152 P metabolic process GO:0008641 F ubiquitin-like modifier activating enzyme activity GO:0046872 F metal ion binding
4882	O_BomoMSG14395_complete:A_BomoMSG_c24777_g1_i4 153bp	Bomo_Chr5
4883	O_BomoMSG14396_complete:A_BomoMSG_c24777_g1_i4 115bp	Bomo_Chr5
4884	O_BomoMSG14397_internal:A_BomoMSG_c24778_g1_i1 214bp	Bomo_Chr20	gag-pol_polyprotein,_partial_[Lasius_niger]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0004190 F aspartic-type endopeptidase activity GO:0005524 F ATP binding GO:0006508 P proteolysis GO:0008233 F peptidase activity GO:0008270 F zinc ion binding GO:0015074 P DNA integration GO:0016787 F hydrolase activity GO:0046872 F metal ion binding
4885	O_BomoMSG14398_internal:A_BomoMSG_c24778_g1_i2 131bp	Bomo_Chr1	gag-pol_polyprotein,_partial_[Lasius_niger]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0004190 F aspartic-type endopeptidase activity GO:0005524 F ATP binding GO:0006508 P proteolysis GO:0008233 F peptidase activity GO:0008270 F zinc ion binding GO:0015074 P DNA integration GO:0016787 F hydrolase activity GO:0046872 F metal ion binding
4886	O_BomoMSG14399_internal:A_BomoMSG_c24779_g1_i1 159bp	Bomo_Chr6	protein_abrupt_isoform_X2_[Bombyx_mori]
4887	O_BomoMSG1439_internal:A_BomoMSG_c7030_g1_i1 127bp	Bomo_Chr21	uncharacterized_protein_LOC101746153_isoform_X2_[Bombyx_mori]
4888	O_BomoMSG143_internal:A_BomoMSG_c543_g1_i1 268bp	Bomo_Chr3	protein_transport_protein_Sec31A_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0002474 P antigen processing and presentation of peptide antigen via MHC class I GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005829 C cytosol GO:0006810 P transport GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport GO:0012507 C ER to Golgi transport vesicle membrane GO:0015031 P protein transport GO:0016020 C membrane GO:0016192 P vesicle-mediated transport GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0030120 C vesicle coat GO:0030127 C COPII vesicle coat GO:0030134 C COPII-coated ER to Golgi transport vesicle GO:0031410 C cytoplasmic vesicle GO:0036498 P IRE1-mediated unfolded protein response GO:0043231 C intracellular membrane-bounded organelle GO:0048208 P COPII vesicle coating GO:0048306 F calcium-dependent protein binding GO:0048471 C perinuclear region of cytoplasm GO:0051592 P response to calcium ion GO:0070971 C endoplasmic reticulum exit site
4889	O_BomoMSG14400_5prime_partial:A_BomoMSG_c24779_g1_i2 205bp	Bomo_Chr6	zinc_finger_and_BTB_domain-containing_protein_11_isoform_X1_[Bombyx_mori]
4890	O_BomoMSG14401_complete:A_BomoMSG_c24780_g1_i1 232bp	Bomo_Chr6	peroxisomal_membrane_protein_11C_[Bombyx_mori]	GO:0005515 F protein binding GO:0005777 C peroxisome GO:0005778 C peroxisomal membrane GO:0005779 C integral component of peroxisomal membrane GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016559 P peroxisome fission GO:0031231 C intrinsic component of peroxisomal membrane GO:0043234 C protein-containing complex GO:0044375 P regulation of peroxisome size