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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4741 O_BomoMSG14268_3prime_partial:A_BomoMSG_c24733_g3_i1
114bp
4742 O_BomoMSG14269_complete:A_BomoMSG_c24734_g1_i1
549bp
 39S_ribosomal_protein_S30,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
4743 O_BomoMSG1426_internal:A_BomoMSG_c6837_g1_i1
112bp
 G-protein_coupled_receptor_Mth2_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0006950 P response to stress
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4744 O_BomoMSG14270_complete:A_BomoMSG_c24735_g1_i1
329bp
 activating_signal_cointegrator_1_isoform_X1_[Bombyx_mori]
GO:0002020 F protease binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0008270 F zinc ion binding
GO:0016922 F nuclear receptor binding
GO:0030331 F estrogen receptor binding
GO:0030520 P intracellular estrogen receptor signaling pathway
GO:0035035 F histone acetyltransferase binding
GO:0044389 F ubiquitin-like protein ligase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:1901998 P toxin transport
4745 O_BomoMSG14271_complete:A_BomoMSG_c24735_g1_i1
156bp
4746 O_BomoMSG14272_complete:A_BomoMSG_c24735_g1_i2
512bp
 activating_signal_cointegrator_1_isoform_X1_[Bombyx_mori]
GO:0002020 F protease binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0008270 F zinc ion binding
GO:0016922 F nuclear receptor binding
GO:0030331 F estrogen receptor binding
GO:0030520 P intracellular estrogen receptor signaling pathway
GO:0035035 F histone acetyltransferase binding
GO:0044389 F ubiquitin-like protein ligase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:1901998 P toxin transport
4747 O_BomoMSG14273_complete:A_BomoMSG_c24735_g1_i2
156bp
4748 O_BomoMSG14274_complete:A_BomoMSG_c24736_g1_i1
599bp
 LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
4749 O_BomoMSG14275_complete:A_BomoMSG_c24736_g1_i3
559bp
 LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
4750 O_BomoMSG14276_internal:A_BomoMSG_c24737_g1_i1
189bp
 probable_ATP-dependent_RNA_helicase_CG8611_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
4751 O_BomoMSG14277_internal:A_BomoMSG_c24737_g1_i2
571bp
 probable_ATP-dependent_RNA_helicase_CG8611_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
4752 O_BomoMSG14278_5prime_partial:A_BomoMSG_c24740_g1_i1
158bp
 uncharacterized_protein_LOC101739296_[Bombyx_mori]
4753 O_BomoMSG14279_complete:A_BomoMSG_c24740_g1_i2
263bp
 uncharacterized_protein_LOC101739296_[Bombyx_mori]
4754 O_BomoMSG1427_internal:A_BomoMSG_c6840_g1_i1
119bp
 uncharacterized_protein_LOC105842629_[Bombyx_mori]
4755 O_BomoMSG14280_internal:A_BomoMSG_c24741_g1_i1
264bp
 nesprin-1_isoform_X1_[Bombyx_mori]
4756 O_BomoMSG14281_internal:A_BomoMSG_c24742_g1_i1
393bp
 LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007400 P neuroblast fate determination
GO:0007403 P glial cell fate determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035222 P wing disc pattern formation
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0048106 P establishment of thoracic bristle planar orientation
GO:0048749 P compound eye development
GO:0050832 P defense response to fungus
4757 O_BomoMSG14282_5prime_partial:A_BomoMSG_c24742_g1_i1
201bp
4758 O_BomoMSG14283_5prime_partial:A_BomoMSG_c24742_g1_i1
165bp
4759 O_BomoMSG14284_complete:A_BomoMSG_c24742_g1_i1
100bp
4760 O_BomoMSG14285_internal:A_BomoMSG_c24742_g1_i2
150bp
 LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007400 P neuroblast fate determination
GO:0007403 P glial cell fate determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035222 P wing disc pattern formation
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0048106 P establishment of thoracic bristle planar orientation
GO:0048749 P compound eye development
GO:0050832 P defense response to fungus
4761 O_BomoMSG14286_internal:A_BomoMSG_c24742_g1_i3
148bp
4762 O_BomoMSG14287_internal:A_BomoMSG_c24742_g1_i3
147bp
 LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
4763 O_BomoMSG14288_internal:A_BomoMSG_c24742_g1_i3
147bp
4764 O_BomoMSG14289_internal:A_BomoMSG_c24742_g1_i4
173bp
4765 O_BomoMSG1428_internal:A_BomoMSG_c6853_g1_i1
127bp
 adenylate_kinase_9-like_[Helicoverpa_armigera]
4766 O_BomoMSG14290_internal:A_BomoMSG_c24742_g1_i4
173bp
 LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
4767 O_BomoMSG14291_5prime_partial:A_BomoMSG_c24742_g1_i4
165bp
4768 O_BomoMSG14292_5prime_partial:A_BomoMSG_c24742_g1_i4
103bp
4769 O_BomoMSG14293_internal:A_BomoMSG_c24742_g1_i5
310bp
 LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
4770 O_BomoMSG14294_5prime_partial:A_BomoMSG_c24742_g1_i5
201bp
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