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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4771 O_BomoMSG14295_5prime_partial:A_BomoMSG_c24742_g1_i5
165bp
4772 O_BomoMSG14296_5prime_partial:A_BomoMSG_c24742_g1_i5
135bp
4773 O_BomoMSG14297_complete:A_BomoMSG_c24742_g1_i5
100bp
4774 O_BomoMSG14298_internal:A_BomoMSG_c24743_g1_i1
203bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
4775 O_BomoMSG14299_internal:A_BomoMSG_c24744_g1_i1
385bp
 gag-pol_polyprotein,_partial_[Lasius_niger]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4776 O_BomoMSG1429_internal:A_BomoMSG_c6863_g1_i1
106bp
 equilibrative_nucleoside_transporter_3_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006810 P transport
GO:0008283 P cell population proliferation
GO:0015858 P nucleoside transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0031965 C nuclear membrane
GO:1901642 P nucleoside transmembrane transport
4777 O_BomoMSG142_complete:A_BomoMSG_c536_g1_i1
104bp
4778 O_BomoMSG14300_complete:A_BomoMSG_c24744_g1_i1
108bp
4779 O_BomoMSG14301_internal:A_BomoMSG_c24744_g1_i3
209bp
 Copia_protein_[Trachymyrmex_cornetzi]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4780 O_BomoMSG14302_complete:A_BomoMSG_c24745_g1_i1
499bp
 synaptic_vesicle_glycoprotein_2C_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0007268 P chemical synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0055085 P transmembrane transport
4781 O_BomoMSG14303_complete:A_BomoMSG_c24745_g1_i1
106bp
4782 O_BomoMSG14304_3prime_partial:A_BomoMSG_c24745_g1_i2
127bp
 synaptic_vesicle_glycoprotein_2C_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0090416 F nicotinate transmembrane transporter activity
GO:0090417 F N-methylnicotinate transmembrane transporter activity
GO:2001142 P nicotinate transport
GO:2001143 P N-methylnicotinate transport
4783 O_BomoMSG14305_3prime_partial:A_BomoMSG_c24746_g1_i1
236bp
 fibronectin_type-III_domain-containing_protein_3a_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4784 O_BomoMSG14306_3prime_partial:A_BomoMSG_c24746_g1_i2
341bp
 fibronectin_type-III_domain-containing_protein_3a_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4785 O_BomoMSG14307_complete:A_BomoMSG_c24746_g1_i2
104bp
4786 O_BomoMSG14308_3prime_partial:A_BomoMSG_c24747_g1_i1
255bp
 myc_box-dependent-interacting_protein_1_isoform_X1_[Bombyx_mori]
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005737 C cytoplasm
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007612 P learning
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031256 C leading edge membrane
GO:0031410 C cytoplasmic vesicle
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0048488 P synaptic vesicle endocytosis
4787 O_BomoMSG14309_internal:A_BomoMSG_c24747_g1_i2
118bp
 myc_box-dependent-interacting_protein_1_isoform_X3_[Bombyx_mori]
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005802 C trans-Golgi network
GO:0005856 C cytoskeleton
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
4788 O_BomoMSG1430_complete:A_BomoMSG_c6871_g1_i1
143bp
 protein_kinase_C_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004697 F protein kinase C activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
4789 O_BomoMSG14310_3prime_partial:A_BomoMSG_c24748_g1_i1
316bp
 conserved_oligomeric_Golgi_complex_subunit_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
4790 O_BomoMSG14311_complete:A_BomoMSG_c24749_g2_i1
309bp
 mRNA_transport_regulator_3_isoform_X2_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
4791 O_BomoMSG14312_5prime_partial:A_BomoMSG_c24749_g8_i2
103bp
4792 O_BomoMSG14313_complete:A_BomoMSG_c24751_g1_i1
460bp
 eIF2B-gamma_protein_isoform_X1_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0009058 P biosynthetic process
GO:0014003 P oligodendrocyte development
GO:0016779 F nucleotidyltransferase activity
GO:0043547 P positive regulation of GTPase activity
GO:0051716 P cellular response to stimulus
4793 O_BomoMSG14314_complete:A_BomoMSG_c24751_g1_i1
149bp
4794 O_BomoMSG14315_complete:A_BomoMSG_c24751_g1_i2
460bp
 eIF2B-gamma_protein_isoform_X1_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0009058 P biosynthetic process
GO:0014003 P oligodendrocyte development
GO:0016779 F nucleotidyltransferase activity
GO:0043547 P positive regulation of GTPase activity
GO:0051716 P cellular response to stimulus
4795 O_BomoMSG14316_complete:A_BomoMSG_c24751_g1_i2
149bp
4796 O_BomoMSG14317_5prime_partial:A_BomoMSG_c24751_g1_i3
132bp
 eIF2B-gamma_protein_isoform_X1_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0009058 P biosynthetic process
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0014003 P oligodendrocyte development
GO:0016779 F nucleotidyltransferase activity
GO:0021766 P hippocampus development
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0051716 P cellular response to stimulus
4797 O_BomoMSG14318_5prime_partial:A_BomoMSG_c24751_g1_i4
138bp
 eIF2B-gamma_protein_isoform_X1_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0009058 P biosynthetic process
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0014003 P oligodendrocyte development
GO:0016779 F nucleotidyltransferase activity
GO:0021766 P hippocampus development
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0051716 P cellular response to stimulus
4798 O_BomoMSG14319_3prime_partial:A_BomoMSG_c24752_g2_i1
324bp
 bone_morphogenetic_protein_receptor_type-1B_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001501 P skeletal system development
GO:0001502 P cartilage condensation
GO:0001550 P ovarian cumulus expansion
GO:0001654 P eye development
GO:0001948 F protein binding
GO:0002062 P chondrocyte differentiation
GO:0002063 P chondrocyte development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004675 F transmembrane receptor protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005024 F transforming growth factor beta-activated receptor activity
GO:0005025 F transforming growth factor beta receptor activity, type I
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006703 P estrogen biosynthetic process
GO:0006954 P inflammatory response
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030166 P proteoglycan biosynthetic process
GO:0030425 C dendrite
GO:0030501 P positive regulation of bone mineralization
GO:0030509 P BMP signaling pathway
GO:0031290 P retinal ganglion cell axon guidance
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0035108 P limb morphogenesis
GO:0042698 P ovulation cycle
GO:0043010 P camera-type eye development
GO:0043025 C neuronal cell body
GO:0045597 P positive regulation of cell differentiation
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0051216 P cartilage development
GO:0060041 P retina development in camera-type eye
GO:0060350 P endochondral bone morphogenesis
GO:0061036 P positive regulation of cartilage development
GO:0071363 P cellular response to growth factor stimulus
GO:0071773 P cellular response to BMP stimulus
GO:1902043 P positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902731 P negative regulation of chondrocyte proliferation
4799 O_BomoMSG1431_internal:A_BomoMSG_c6882_g1_i1
104bp
 zinc_finger_protein_43-like_[Helicoverpa_armigera]
4800 O_BomoMSG14320_5prime_partial:A_BomoMSG_c24752_g2_i1
152bp
 PREDICTED:_netrin_receptor_UNC5C_[Astyanax_mexicanus]
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