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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4681 O_BomoMSG14213_5prime_partial:A_BomoMSG_c24709_g1_i2
100bp
4682 O_BomoMSG14214_3prime_partial:A_BomoMSG_c24709_g2_i1
269bp
 uridine-cytidine_kinase-like_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004849 F uridine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0008152 P metabolic process
GO:0016032 P viral process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
GO:0044211 P CTP salvage
4683 O_BomoMSG14215_5prime_partial:A_BomoMSG_c24709_g2_i1
118bp
4684 O_BomoMSG14216_3prime_partial:A_BomoMSG_c24709_g2_i2
262bp
 uridine-cytidine_kinase-like_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004849 F uridine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0008152 P metabolic process
GO:0016032 P viral process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
GO:0044211 P CTP salvage
4685 O_BomoMSG14217_5prime_partial:A_BomoMSG_c24709_g2_i2
118bp
4686 O_BomoMSG14218_3prime_partial:A_BomoMSG_c24710_g1_i1
132bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
4687 O_BomoMSG14219_3prime_partial:A_BomoMSG_c24710_g1_i2
220bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
4688 O_BomoMSG1421_internal:A_BomoMSG_c6765_g1_i1
161bp
 uncharacterized_protein_LOC101746965_[Bombyx_mori]
4689 O_BomoMSG14220_complete:A_BomoMSG_c24712_g1_i3
296bp
 protein_MEMO1_[Bombyx_mori]
GO:0032886 P regulation of microtubule-based process
4690 O_BomoMSG14221_5prime_partial:A_BomoMSG_c24713_g1_i1
285bp
 uridine-cytidine_kinase_2_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004849 F uridine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0006238 P CMP salvage
GO:0006909 P phagocytosis
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019206 F nucleoside kinase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
GO:0044211 P CTP salvage
4691 O_BomoMSG14222_5prime_partial:A_BomoMSG_c24713_g1_i2
294bp
 uridine-cytidine_kinase_2_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004849 F uridine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0006238 P CMP salvage
GO:0006909 P phagocytosis
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019206 F nucleoside kinase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
GO:0044211 P CTP salvage
4692 O_BomoMSG14223_3prime_partial:A_BomoMSG_c24714_g1_i1
507bp
 integrator_complex_subunit_7_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006974 P cellular response to DNA damage stimulus
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
4693 O_BomoMSG14224_complete:A_BomoMSG_c24714_g1_i1
102bp
4694 O_BomoMSG14225_3prime_partial:A_BomoMSG_c24714_g1_i2
334bp
 integrator_complex_subunit_7_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006974 P cellular response to DNA damage stimulus
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0071479 P cellular response to ionizing radiation
4695 O_BomoMSG14226_complete:A_BomoMSG_c24714_g1_i2
102bp
4696 O_BomoMSG14227_5prime_partial:A_BomoMSG_c24715_g1_i1
402bp
 nuclear_pore_complex_protein_Nup107_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005813 C centrosome
GO:0006355 P regulation of transcription, DNA-templated
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
4697 O_BomoMSG14228_3prime_partial:A_BomoMSG_c24717_g1_i1
131bp
 uncharacterized_protein_LOC101743725_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
4698 O_BomoMSG14229_3prime_partial:A_BomoMSG_c24717_g1_i2
189bp
 uncharacterized_protein_LOC101743725_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
4699 O_BomoMSG1422_internal:A_BomoMSG_c6804_g1_i1
149bp
 uncharacterized_protein_LOC101740680_[Bombyx_mori]
4700 O_BomoMSG14230_complete:A_BomoMSG_c24718_g1_i1
415bp
 transcription_factor_E74B_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0008219 P cell death
GO:0035071 P salivary gland cell autophagic cell death
GO:0040034 P regulation of development, heterochronic
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048477 P oogenesis
4701 O_BomoMSG14231_complete:A_BomoMSG_c24718_g1_i1
134bp
4702 O_BomoMSG14232_complete:A_BomoMSG_c24718_g1_i1
117bp
4703 O_BomoMSG14233_5prime_partial:A_BomoMSG_c24719_g1_i1
516bp
 serine/arginine-rich_splicing_factor_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001104 F transcription coregulator activity
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
4704 O_BomoMSG14234_5prime_partial:A_BomoMSG_c24719_g1_i2
109bp
 serine/arginine-rich_splicing_factor_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001104 F transcription coregulator activity
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
4705 O_BomoMSG14235_5prime_partial:A_BomoMSG_c24719_g1_i3
133bp
 serine/arginine-rich_splicing_factor_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001104 F transcription coregulator activity
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
4706 O_BomoMSG14236_complete:A_BomoMSG_c24721_g1_i1
214bp
 ras-related_GTP-binding_protein_Rab11_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0000922 C spindle pole
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005771 C multivesicular body
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005813 C centrosome
GO:0005828 C kinetochore microtubule
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007080 P mitotic metaphase plate congression
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0010634 P positive regulation of epithelial cell migration
GO:0010796 P regulation of multivesicular body size
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030133 C transport vesicle
GO:0030424 C axon
GO:0030953 P astral microtubule organization
GO:0031175 P neuron projection development
GO:0031410 C cytoplasmic vesicle
GO:0031489 F myosin V binding
GO:0031982 C vesicle
GO:0032154 C cleavage furrow
GO:0032402 P melanosome transport
GO:0036258 P multivesicular body assembly
GO:0043234 C protein-containing complex
GO:0045335 C phagocytic vesicle
GO:0045773 P positive regulation of axon extension
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048471 C perinuclear region of cytoplasm
GO:0051223 P regulation of protein transport
GO:0051650 P establishment of vesicle localization
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0060627 P regulation of vesicle-mediated transport
GO:0070062 C extracellular exosome
GO:0072594 P establishment of protein localization to organelle
GO:0072659 P protein localization to plasma membrane
GO:0090150 P establishment of protein localization to membrane
GO:0090307 P mitotic spindle assembly
GO:1990182 P exosomal secretion
4707 O_BomoMSG14237_complete:A_BomoMSG_c24721_g1_i7
214bp
 ras-related_GTP-binding_protein_Rab11_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0000922 C spindle pole
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005771 C multivesicular body
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005813 C centrosome
GO:0005828 C kinetochore microtubule
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007080 P mitotic metaphase plate congression
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0010634 P positive regulation of epithelial cell migration
GO:0010796 P regulation of multivesicular body size
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030133 C transport vesicle
GO:0030424 C axon
GO:0030953 P astral microtubule organization
GO:0031175 P neuron projection development
GO:0031410 C cytoplasmic vesicle
GO:0031489 F myosin V binding
GO:0031982 C vesicle
GO:0032154 C cleavage furrow
GO:0032402 P melanosome transport
GO:0036258 P multivesicular body assembly
GO:0043234 C protein-containing complex
GO:0045335 C phagocytic vesicle
GO:0045773 P positive regulation of axon extension
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048471 C perinuclear region of cytoplasm
GO:0051223 P regulation of protein transport
GO:0051650 P establishment of vesicle localization
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0060627 P regulation of vesicle-mediated transport
GO:0070062 C extracellular exosome
GO:0072594 P establishment of protein localization to organelle
GO:0072659 P protein localization to plasma membrane
GO:0090150 P establishment of protein localization to membrane
GO:0090307 P mitotic spindle assembly
GO:1990182 P exosomal secretion
4708 O_BomoMSG14238_complete:A_BomoMSG_c24721_g5_i1
120bp
4709 O_BomoMSG14239_complete:A_BomoMSG_c24721_g6_i3
102bp
4710 O_BomoMSG1423_5prime_partial:A_BomoMSG_c6808_g1_i1
142bp
 protein_expanded_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0005515 F protein binding
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005915 C zonula adherens
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007050 P regulation of cell cycle
GO:0007096 P regulation of exit from mitosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007444 P imaginal disc development
GO:0008101 P BMP signaling pathway
GO:0008285 P negative regulation of cell population proliferation
GO:0009966 P regulation of signal transduction
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0017124 F SH3 domain binding
GO:0030707 P ovarian follicle cell development
GO:0032456 P endocytic recycling
GO:0035329 P hippo signaling
GO:0035330 P regulation of hippo signaling
GO:0035331 P negative regulation of hippo signaling
GO:0036375 C Kibra-Ex-Mer complex
GO:0040008 P regulation of growth
GO:0042127 P regulation of cell population proliferation
GO:0042327 P positive regulation of phosphorylation
GO:0042981 P regulation of apoptotic process
GO:0045571 P negative regulation of imaginal disc growth
GO:0045595 P regulation of cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046620 P regulation of organ growth
GO:0046621 P negative regulation of organ growth
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