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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4561 O_BomoMSG14105_5prime_partial:A_BomoMSG_c24653_g1_i2
286bp
 lysosomal_thioesterase_PPT2_homolog_isoform_X2_[Bombyx_mori]
GO:0005764 C lysosome
GO:0008474 F palmitoyl-(protein) hydrolase activity
GO:0016787 F hydrolase activity
GO:0016790 F thiolester hydrolase activity
GO:0098599 F palmitoyl hydrolase activity
GO:0098734 P macromolecule depalmitoylation
4562 O_BomoMSG14106_5prime_partial:A_BomoMSG_c24653_g1_i3
225bp
 lysosomal_thioesterase_PPT2_homolog_isoform_X2_[Bombyx_mori]
GO:0005764 C lysosome
GO:0008474 F palmitoyl-(protein) hydrolase activity
GO:0016787 F hydrolase activity
GO:0016790 F thiolester hydrolase activity
GO:0098599 F palmitoyl hydrolase activity
GO:0098734 P macromolecule depalmitoylation
4563 O_BomoMSG14107_complete:A_BomoMSG_c24654_g1_i1
278bp
 piggyBac_transposable_element-derived_protein_4_[Bombyx_mori]
4564 O_BomoMSG14108_complete:A_BomoMSG_c24654_g1_i2
308bp
 piggyBac_transposable_element-derived_protein_4_[Bombyx_mori]
4565 O_BomoMSG14109_complete:A_BomoMSG_c24654_g1_i2
278bp
 piggyBac_transposable_element-derived_protein_4_[Bombyx_mori]
4566 O_BomoMSG1410_5prime_partial:A_BomoMSG_c6671_g1_i1
110bp
4567 O_BomoMSG14110_complete:A_BomoMSG_c24655_g1_i1
218bp
 DNA-directed_RNA_polymerase_III_subunit_RPC7-like_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008283 P cell population proliferation
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
4568 O_BomoMSG14111_5prime_partial:A_BomoMSG_c24655_g1_i2
228bp
 DNA-directed_RNA_polymerase_III_subunit_RPC7-like_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008283 P cell population proliferation
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
4569 O_BomoMSG14112_complete:A_BomoMSG_c24656_g1_i1
226bp
 aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4570 O_BomoMSG14113_3prime_partial:A_BomoMSG_c24656_g1_i3
329bp
 aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4571 O_BomoMSG14114_5prime_partial:A_BomoMSG_c24657_g1_i2
117bp
 FAD-linked_sulfhydryl_oxidase_ALR_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0008083 F growth factor activity
GO:0015035 F protein-disulfide reductase activity
GO:0016491 F oxidoreductase activity
GO:0016972 F thiol oxidase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
4572 O_BomoMSG14115_complete:A_BomoMSG_c24657_g1_i3
156bp
 FAD-linked_sulfhydryl_oxidase_ALR_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0008083 F growth factor activity
GO:0015035 F protein-disulfide reductase activity
GO:0016491 F oxidoreductase activity
GO:0016972 F thiol oxidase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
4573 O_BomoMSG14116_internal:A_BomoMSG_c24658_g1_i2
111bp
 sulfotransferase_1C3_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0008146 F sulfotransferase activity
GO:0016740 F transferase activity
GO:0047685 F amine sulfotransferase activity
GO:0051923 P sulfation
4574 O_BomoMSG14117_complete:A_BomoMSG_c24659_g1_i1
153bp
 death-associated_small_cytoplasmic_leucine-rich_protein_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
4575 O_BomoMSG14118_complete:A_BomoMSG_c24659_g1_i3
181bp
 death-associated_small_cytoplasmic_leucine-rich_protein_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
4576 O_BomoMSG14119_internal:A_BomoMSG_c24661_g3_i1
276bp
 uncharacterized_protein_LOC101737721_[Bombyx_mori]
4577 O_BomoMSG1411_3prime_partial:A_BomoMSG_c6671_g1_i1
105bp
 LOW_QUALITY_PROTEIN:_dynein_heavy_chain_10,_axonemal_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007018 P microtubule-based movement
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0030286 C dynein complex
GO:0042995 C cell projection
4578 O_BomoMSG14120_5prime_partial:A_BomoMSG_c24661_g3_i1
108bp
4579 O_BomoMSG14121_internal:A_BomoMSG_c24661_g2_i2
112bp
 uncharacterized_protein_LOC110384711_isoform_X1_[Bombyx_mori]
4580 O_BomoMSG14122_3prime_partial:A_BomoMSG_c24661_g2_i2
111bp
4581 O_BomoMSG14123_complete:A_BomoMSG_c24662_g1_i1
244bp
 juvenile_hormone_esterase_binding_protein_[Bombyx_mori]
GO:0005739 C mitochondrion
4582 O_BomoMSG14124_5prime_partial:A_BomoMSG_c24662_g1_i2
242bp
 juvenile_hormone_esterase_binding_protein_[Bombyx_mori]
GO:0005739 C mitochondrion
4583 O_BomoMSG14125_5prime_partial:A_BomoMSG_c24663_g1_i1
225bp
 protein_NDRG3_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0070062 C extracellular exosome
4584 O_BomoMSG14126_complete:A_BomoMSG_c24663_g1_i3
161bp
 protein_NDRG3_isoform_X6_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0070062 C extracellular exosome
4585 O_BomoMSG14127_complete:A_BomoMSG_c24665_g1_i1
409bp
 short-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 P response to starvation
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
4586 O_BomoMSG14128_complete:A_BomoMSG_c24665_g1_i1
125bp
 hypothetical_protein_ACD_75C01044G0002_[uncultured_bacterium]
4587 O_BomoMSG14129_complete:A_BomoMSG_c24665_g1_i2
150bp
 short-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
4588 O_BomoMSG1412_internal:A_BomoMSG_c6680_g1_i1
131bp
4589 O_BomoMSG14130_complete:A_BomoMSG_c24667_g1_i1
542bp
 uncharacterized_protein_LOC101737490_[Bombyx_mori]
4590 O_BomoMSG14131_internal:A_BomoMSG_c24668_g1_i1
470bp
 probable_arginine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004814 F arginine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006420 P arginyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
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